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by Ciro Santilli (@cirosantilli, 37)

E. Coli Whole Cell Model by Covert Lab / Publications

 ... Species Bacteria List of bacteria Escherichia coli E. Coli whole cell simulation E. Coli Whole Cell Model by Covert Lab
 0 By others on same topic  0 Discussions  Updated 2025-05-23  +Created 1970-01-01  See my version
Unfortunately, due to lack of one page to rule them all, the on-Git tree publication list is meager, some of the most relevant ones seems to be:
  • 2021 open access review paper: journals.asm.org/doi/full/10.1128/ecosalplus.ESP-0001-2020 "The E. coli Whole-Cell Modeling Project". They should just past that stuff in a README :-) The article mentions that it is a follow up to the previous M. genitalium whole cell model by Covert lab. Only 43% of known genes modelled at this point however, a shame.
  • 2020 under Science paywall: www.science.org/doi/10.1126/science.aav3751 "Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation"

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