codexpast-exam-of-the-chemistry-course-of-the-year-3-of-the-natural-sciences-course-of-the-university-of-cambridge2022paper-1-quintuple-orbitals.py
past-exam-of-the-chemistry-course-of-the-year-3-of-the-natural-sciences-course-of-the-university-of-cambridge/2022/paper-1-quintuple-orbitals.py
"""Original solution schematic; Python 3.14, numpy 2.3.5, matplotlib 3.10.7.
Writes its own PNG basename to the current working directory.
"""
from pathlib import Path
import sys
for candidate in Path(__file__).resolve().parents:
if (candidate / 'tools' / 'chemistry_diagram.py').exists():
sys.path.insert(0, str(candidate))
break
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.patches import FancyArrowPatch, Circle
from tools.chemistry_diagram import atom, bond, ring, wedge, curly, flow, finish, save, BLUE, ORANGE, GREEN
def txt(ax,x,y,s,size=11,color='0.15',ha='center'):
ax.text(x,y,s,ha=ha,va='center',fontsize=size,color=color)
def couple(ax,a,b,label,rad=.3,offset=(0,0)):
ax.add_patch(FancyArrowPatch(a,b,connectionstyle=f'arc3,rad={rad}',arrowstyle='<->',mutation_scale=10,color=BLUE,lw=1.3))
m=(np.asarray(a)+np.asarray(b))/2+np.asarray(offset)
txt(ax,*m,label,10,BLUE)
def benzene(ax,c=(0,0),scale=1):
t=np.deg2rad([30,90,150,210,270,330]);pts=np.column_stack([np.cos(t),np.sin(t)])*scale+np.asarray(c)
ring(ax,pts,{0:2,2:2,4:2});return pts
def carbonyl(ax,c,left,right,oxy='O',tetra=False,down=None):
x,y=c;o=(x,y+1);bond(ax,c,o,1 if tetra else 2);atom(ax,o,oxy)
for q,label in [(left[0],left[1]),(right[0],right[1])]:bond(ax,c,q);atom(ax,q,label)
if down:bond(ax,c,down[0]);atom(ax,down[0],down[1])
return o
def box(ax,x,y,s,w=2.6,h=.8,color=BLUE,size=11):
from matplotlib.patches import FancyBboxPatch
ax.add_patch(FancyBboxPatch((x-w/2,y-h/2),w,h,boxstyle='round,pad=0.08',fc='white',ec=color,lw=1.2))
if '$' not in s and len(s)>29:
import textwrap
s='\n'.join(textwrap.wrap(s,width=29))
elif '$' in s and len(s)>35:
size=min(size,8.5)
txt(ax,x,y,s,size,color)
def route(rows,title,figsize=(12,6)):
fig,ax=plt.subplots(figsize=figsize)
for i,row in enumerate(rows):
y=-i*1.7
for j,entry in enumerate(row):
x=j*4
if j%2==0:box(ax,x,y,entry,w=3.35,h=1.05,size=11)
else:flow(ax,(x-1.7,y),(x+1.7,y));txt(ax,x,y+.4,entry,10)
finish(ax,(-2,18),(-len(rows)*1.7+.3,1.4),title)
fig.tight_layout();return fig
fig,ax=plt.subplots(figsize=(9,6))
for y,kind,n,xs in [(-3,'σ',2,[0]),(-1.8,'π',4,[-.5,.5]),(-.65,'δ',4,[-.5,.5]),(.65,'δ*',0,[-.5,.5]),(1.8,'π*',0,[-.5,.5]),(3,'σ*',0,[0])]:
for x in xs:
ax.plot([x-.3,x+.3],[y,y],lw=2,color=BLUE)
if n:txt(ax,x,y+.22,'↑↓',14,BLUE)
txt(ax,1.45,y,kind,13)
for side in [-1,1]:
x=side*3
for k in range(5):
xx=x+(k-2)*.22;ax.plot([xx-.08,xx+.08],[0,0],color='0.45')
txt(ax,x,-.4,'Cr(I): d⁵',12)
for y in [-3,-1.8,-.65,.65,1.8,3]:ax.plot([x-side*.55,side*.9],[0,y],color='0.7',ls=':',lw=.6)
ax.annotate('',(-4,3.65),(-4,-3.65),arrowprops={'arrowstyle':'->'});txt(ax,-3.6,3.8,'Energy')
txt(ax,0,-4.1,'σ² π⁴ δ⁴; ten bonding electrons, formal bond order five',12,BLUE)
finish(ax,(-4.6,4.6),(-4.6,4.3),'Idealized bond-axis model; actual ligand-field mixing not shown')
fig.tight_layout()
save(fig,'paper-1-quintuple-orbitals.png')