Label-free quantification (source code)

= Label-free quantification

<Label-free quantification> compares abundance across separately measured samples without introducing a distinguishing isotope or chemical tag. In <proteomics>, a common approach integrates chromatographic signals of corresponding peptide ions.

Matching retention time and mass helps connect the same peptide across runs, while normalization addresses overall signal differences. A missing peak can reflect limited detection rather than true absence, so zeros and missing measurements should not be conflated.