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Let $L=\lceil {\log }_{2}N\rceil$. In the Shor algorithm, first use classical arithmetic to deal with even $N$ and perfect powers, and to reject prime inputs. Perfect-power recognition and primality testing have polynomial-time classical algorithms. Factoring a perfect power $b^k$, with $b,k>1$, already gives a nontrivial factor $b$. We may therefore consider an odd composite $N$ with at least two distinct prime factors.

Choose $\alpha$ uniformly from $1<\alpha <N$ and compute its greatest common divisor with $N$ using the Euclidean algorithm. A proper nontrivial divisor ends the computation. Otherwise $\alpha$ is a unit, and the remaining task is quantum order finding. SetPrepare a uniform quantum superposition in a $t$-qubit register and use quantum modular exponentiation in a second register to obtainRepeated squaring and reversible modular multiplication implement this step with polynomially many quantum gates in $L$. Apply the inverse quantum Fourier transform to the first register and perform a quantum measurement in the computational basis, obtaining $j$. Measuring the second register first, and Fourier-transforming the resulting periodic coset, gives the same distribution of $j$.

Here is a quantitative quantum Fourier sampling bound for order finding. If $r={\mathrm{ord}}_N(\alpha )$, multiplication by $\alpha$ cycles its $r$ orbit states. The Fourier eigenstates of that cycle have eigenvalues $e^{2\pi is/r}$, and the initial state $|1⟩$ has squared overlap $1/r$ with each, for $0\le s<r$. ThereforeConditioned on a particular eigenphase $s/r$, its nearest integer outcome $j_s$ obeys $|j_s/Q-s/r|\le 1/(2Q)$ and has probability at least $4/{\pi }^2$. Indeed the absolute amplitude is $|\sin (\pi Q\delta )/(Q\sin (\pi \delta ))|$, where $\delta =s/r-j_s/Q$. For $|Q\delta |\le 1/2$, the numerator is at least $2Q|\delta |$ and the denominator at most $\pi Q|\delta |$; the limiting value at $\delta =0$ is one.

If $\gcd (s,r)=1$, the fraction $s/r$ is reduced, and $r<N$ givesUse continued-fraction recovery in quantum order finding. The relevant approximation theorem says that reduced fractions satisfying $|a/b-p/q|<1/(2q^2)$ are continued fraction convergents of $a/b$. For an input rational of $O(L)$ digits, their $O(L)$ candidates can be enumerated classically in $O(L^3)$ time, and their denominators are at most the reduced input denominator. This is the supplied continued-fraction result; discard candidate denominators exceeding $N$. A zero measurement is treated as a failed order-finding sample.

For each remaining even candidate denominator $q$, compute $z={\alpha }^{q/2}\mathrm{mod}N$ by repeated squaring, and try $\gcd (z-1,N)$ and $\gcd (z+1,N)$. Return only a divisor $d$ with $1<d<N$; otherwise repeat the quantum sample or choose another $\alpha$. This candidate-denominator gcd post-processing cannot return an incorrect factor, since its output is checked directly. When the recovered denominator is the true even multiplicative order and the square root of one is nontrivial, part (i) guarantees success. Checking ${\alpha }^q\equiv 1(\mathrm{mod}N)$ before trying the gcds is also a valid, more restrictive convention; the single-run distinction matters in part (iii).

Two further standard quantitative facts explain why repetitions remain efficient. First, for a uniformly chosen unit modulo an odd integer with at least two distinct prime divisors, the probability of a useful unit in Shor factorization is at least $1/2$: its true multiplicative order is even and ${\alpha }^{r/2}\not\equiv -1(\mathrm{mod}N)$. To see the source of this bound, the Chinese remainder theorem for unit groups makes the prime-power components independent. Each odd-prime-power unit group is cyclic. If its 2-primary order is $2^v$, the probability of the largest possible value of $v$ is $1/2$, and the probability of any specified smaller value is at most $1/2$. Failure requires all components to have the same $v$: either all zero, making $r$ odd, or all the same positive value, making the halfway power $-1$ in every component. Conditioning on one component, the chance another component matches it is at most $1/2$, so total failure is at most $1/2$.

Second, the fraction of phase numerators coprime to $r$ is $\phi (r)/r$, where $\phi$ is the Euler totient function. The elementary totient-ratio lower bound suffices: if the distinct prime divisors are $p_1<\cdots <p_k$, then $p_j\ge j+1$ and $k\le {\log }_{2}r$. The totient product formula therefore givesThus for a good $\alpha$, the probability of sampling a coprime phase numerator with the required accuracy is at least $(4/{\pi }^2)\phi (r)/r$. This is inverse-polynomial in the input length, so polynomially many repetitions achieve any fixed success probability. The quantum Fourier transform uses $O(t^2)$ elementary rotations and Hadamard gates in the ideal gate description, and the other quantum and classical stages are polynomial in $L$.

The reduction is therefore polynomial in the bit length:A small denominator need not itself be the true multiplicative order; verification of the final factor is essential, and no guarantee is claimed for every individual sample.