Reference level in a regression factor (source code)

= Reference level in a regression factor

= Reference levels in a regression factor
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= Reference level
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With treatment coding, the intercept describes the reference factor level and each displayed factor coefficient is a contrast against that level. Changing the reference level reparametrizes the same fitted model: fitted probabilities and likelihood do not change, but coefficients representing different pairwise contrasts can have different standard errors and p-values.