Run variants Updated +Created
It would be boring if we could only simulate the same condition all the time, so let's have a look at the different boundary conditions that we can apply to the cell!
We are able to alter things like the composition of the external medium, and the genome of the bacteria, which will make the bacteria behave differently.
The variant selection is a bit cumbersome as we have to use indexes instead of names, but one you know what you are doing, it is fine.
Of course, genetic modification is limited only to experimentally known protein interactions due to the intractability of computational protein folding and computational chemistry in general, solving those would bsai.
Initial condition Updated +Created
Basically a subset of the boundary condition for when one of the parameters is time and we are specifying values for the time 0.
Mixed boundary condition Updated +Created
Multiple boundary conditions for different parts of the boundary.
Time dependent boundary condition Updated +Created
Most commonly, boundary conditions such as the Dirichlet boundary condition are taken to be fixed values in time.
But it also makes sense to think about cases where those values vary in time.