 Markov chain Monte Carlo convergence diagnostics

Several chains from dispersed initial states, trace plots, autocorrelation, effective sample sizes, and the rank-normalized split potential scale reduction factor $\hat{R}$ assess mixing and disagreement between chains. An $\hat{R}$ close to one is useful evidence but cannot prove convergence or prove posterior propriety. Comparing chains that explore different modes is especially important; monitor each scientifically important observable and its Monte Carlo uncertainty. A long apparent plateau can also occur when an improper-target sampler is drifting toward a boundary.