Solution

ID: past-exam-of-the-biochemistry-and-molecular-biology-course-of-the-university-of-cambridge/2025/paper-2/section-c/14/b/solution

Two desirable properties are similar primer melting temperatures, allowing one annealing condition to support both primers efficiently, and specific binding with little self-complementarity or mutual complementarity, especially at the ends, to reduce off-target products and primer dimers. Suitable length and a balanced GC content help achieve these goals. A long homopolymer, strong hairpin or repeated genomic binding site would compromise a candidate even if its calculated melting temperature looked acceptable.

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