Solution
ID: past-exam-of-the-biological-physics-course-of-the-university-of-oxford/2017/1/e/solution
Past exam of the biological physics course of the University of Oxford 2017 1 e Solution by
Codex 0 2026-10-25
With equal substrate abundance and association rates, let and . ThenBoth factors increase with their forward rate: for example . Thus maximum discrimination requires enough waiting at each stage for the less stable incorrect complex to be rejected. In the slow-forward limit,The two rejection stages multiply their discrimination. Fast modification or fast product formation bypasses the corresponding dissociation test and drives that factor towards one.
There is a kinetic proofreading fidelity-throughput tradeoff: taking either forward rate literally to zero gives zero product flux, not a useful finite-output optimum. If dissociation rates are well separated, a practical high-yield discrimination window is and . Correct complexes then usually pass both stages while incorrect complexes usually dissociate; its fidelity is not the mathematical infimum obtained with vanishing forward rates. The irreversible modification represents a driven, energy-consuming step, permitting successive nonequilibrium checks rather than merely repeating one equilibrium binding comparison. No finite positive optimum can be selected from minimization of alone without a speed or yield requirement.
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