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The intersection hypothesis says that $X$ is a semi-separated scheme. For an affine open subscheme $V\subseteq X$, the intersection $V\cap U$ is affine. Restricting the given short exact sequence of sheaves to it and applying the affine module-sheaf equivalence gives an exact sequence of global sections:These are exactly the sections on $V$ of the three direct image sheaves. Affine opens form a basis, and every section of the last sheaf on such a basis open lifts to the middle sheaf. This proves surjectivity as a sheaf morphism; left exactness of direct image supplies the other positions. Hence direct image preserves this short exact sequence. The crucial ingredient is exactness of sections of quasi-coherent sheaves on an affine intersection; arbitrary open immersions need not have this property.

For the cohomology comparison, every nonempty finite intersectionis affine. This follows by mathematical induction, intersecting the affine intersection already obtained with the next affine open. The restriction of $\mathcal{F}$ to it is quasi-coherent, so vanishing of quasi-coherent cohomology on an affine scheme givesWe now prove why this local vanishing gives the acyclic cover theorem, rather than identifying the two sorts of cohomology without a comparison.

Take a flasque resolution $0\to \mathcal{F}\to {\mathcal{I}}^0\to {\mathcal{I}}^1\to \cdots$. Here a flabby sheaf has surjective restriction maps; its restrictions to open subsets are still flabby and have zero higher sheaf cohomology. Form the double complexThe horizontal differential is the alternating restriction map $d_{\mathrm{C}}$; the vertical one $d_{\mathrm{I}}$ is induced by the resolution. They commute, so the total differential in bidegree $(p,q)$ is $d_{\mathrm{C}}+(-1{)}^p{d}_{\mathrm{I}}$ and has square zero. The Čech resolution on a semi-separated scheme uses precisely these intersections.

A flabby sheaf has zero positive Čech cohomology for a finite open cover, and its degree-zero Čech cohomology is its global sections. One way to establish this auxiliary fact is to use the exact augmented two-open complexExactness at the first two terms is the sheaf gluing axiom; the last map is onto because a section on the intersection extends to $V$. For the induction step, write $V$ for the union of all but the last open and $W$ for the last open. Separate Čech cochains according to whether their index list contains the last index. The resulting two-block complex compares the smaller cover of $V$ with its restricted cover of $V\cap W$, together with $\Gamma (W,\mathcal{I})$ in degree zero. By induction those two smaller cover complexes have cohomology only in degree zero, where they give $\Gamma (V,\mathcal{I})$ and $\Gamma (V\cap W,\mathcal{I})$. The displayed two-open exact sequence then gives zero positive-degree cohomology for the full cover. This proves the auxiliary fact by induction on the number of opens. Thus horizontal cohomology of $C^{\bullet ,q}$ consists only of $\Gamma (X,{\mathcal{I}}^q)$ in degree zero. Computing the cohomology of the total complex first horizontally therefore gives $H^n(X,\mathcal{F})$, by the resolution principle for sheaf cohomology.

On the other hand, vertical cohomology issince the restricted flasque resolutions compute cohomology on each intersection. The already established affine vanishing makes all rows with $q>0$ zero. The surviving row $q=0$ is exactly the Čech cochain complex ${\check{C}}^{\bullet }(\mathcal{U},\mathcal{F})$. Computing total cohomology first vertically therefore gives ${\check{H}}^n(\mathcal{U},\mathcal{F})$. These two computations are justified by the two filtrations of the first-quadrant double complex: in every total degree only finitely many terms occur, and the cover also bounds the horizontal degree. Their edge maps give the natural identificationFor negative degrees both groups are zero by convention. In particular, degree zero is the usual identification by the sheaf gluing axiom, not merely a comparison of dimensions.