Free-running circadian rhythm ($\tau$)

A free-running circadian rhythm persists without an entraining cycle. Its period $\tau$ separates corresponding circadian phases, such as successive activity onsets, under specified constant conditions.^[ref] A circadian phase tells where the system is within its cycle; a period tells how long one cycle takes. Choosing onset rather than peak as the reference changes the phase label, not the period of an ideal repeating signal.

Consider an original, deliberately idealized model with $\tau =23.5\mathrm{h}$. For seven days prescribe a 12:12 LD cycle with activity starting at hour 12 of each 24-hour day. Then omit the next scheduled dawn and keep the environment dark. Stipulate that the first DD onset retains hour 12, and that every later onset is exactly $23.5\mathrm{h}$ after the previous one. Activity lasts eight hours after each onset. These are chosen model values, not recorded mouse or human data, and the fixed activity window represents an output of the model rather than the molecular mechanism of a circadian clock.

An actogram displays activity against time in successive rows. Here each row spans $T=24\mathrm{h}$, regardless of the circadian rhythm's period. If $t_0$ is the first DD onset and $n$ counts completed free-running cycles, thenThe unwrapped onset displacement $x_n$ is therefore $-0.5n\mathrm{h}$. After eight cycles the onset is four hours earlier than a 24-hour continuation would predict; after sixteen cycles it is eight hours earlier. Because these onsets remain within successive calendar rows in the displayed interval, their row positions are $12,11.5,11,\dots ,4$ hours. The visual slant comes from comparing two different periods, not from cessation of the oscillation.

An alternative phase oscillator description makes the same distinction explicit. Set the circadian phase to zero at $t_0$ and defineThe angular frequency $\omega$ is constant in this model. Onset occurs whenever the unwrapped circadian phase completes another turn. A period longer than $T$ would instead produce later onsets; equality would produce aligned rows even without entrainment of circadian rhythm. Thus aligned rows by themselves do not identify the cause of a daily pattern. Real activity can be noisy, and a free-running circadian rhythm's period can vary with conditions or with time after release; the stipulated straight line assumes a stationary period.