{tag=Connectome by species}
{tag=Mus musculus}
{title2=Mus musculus}

Bibliography:
* https://www.nature.com/articles/d41586-023-02559-9 The quest to map the mouse brain by Diana Kwon (2023)

\Video[https://www.youtube.com/watch?v=ldXEuUVkDuw]
{title=A Simulated Mouse Brain in a Virtual Mouse Body by <Human Brain Project> (2015)}
{description=Nice <brain-in-the-loop>.}


Mouse brain

{c}
{title2=2021}

* https://github.com/NeLy-EPFL/NeuroMechFly
* https://www.nature.com/articles/s41592-022-01466-7

Just imagine this together with a <Drosophila connectome> on a single <brain-in-the-loop> simulation.

\Image[https://web.archive.org/web/20230302220755im_/https://github.com/NeLy-EPFL/NeuroMechFly/raw/main/docs/images/perturbation.gif]
{source=https://github.com/NeLy-EPFL/NeuroMechFly}


NeuroMechFly

{c}
{tag=Organism model}
{wiki}

https://openworm.org

<Whole organism simulation> of <C. elegans>.

High level simulation only, no way to get from <DNA> to worm! :-) Includes:
* <nervous system>
* muscle system

3D body viewer at: http://browser.openworm.org/ TODO can you click on a cell to get its name?

\Video[https://www.youtube.com/watch?v=SaovWiZJUWY]
{title=<OpenWorm> Sibernetic demo by Mike Vella (2013)}
{description=Sibernetic adds a <fluid dynamics> solver for <brain-in-the-loop> simulation of <C. elegans>.}


Ciro Santilli @cirosantilli 36

 Incoming links: Brain-in-the-loop