Yes. Synchronous gauge in cosmology uses freely falling time lines and sets the lapse and shift perturbations to zero, so no gravitational-potential force appears explicitly in this component of momentum conservation. Metric perturbations still affect the other field equations, the evolution of matter variables, and the relation between coordinate-dependent variables and gauge-invariant observables; synchronous gauge also retains residual gauge modes.
In Newtonian gauge in cosmology, the time-time metric perturbation is a Newtonian gravitational potential. Its spatial gradient therefore appears explicitly as a force term in the Euler equation. The difference is a coordinate representation of the same covariant conservation law.
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