For affected offspring and heterozygous parents at a diallelic locus, let count transmissions of allele 1 with allele 2 untransmitted and count the reverse. Under the fair-transmission null, conditional on , is binomial with probability . The asymptotic statistic is , with a one-degree-of-freedom chi-squared null distribution. Homozygous-parent transmissions give no contrast. Conditioning within families protects this test from ordinary population stratification.
Within-family Mendelian randomization uses genetic contrasts within families, such as differences between siblings. Conditioning on shared parental background can reduce population stratification and family-level sources of confounding, although the exclusion restriction and sufficient instrument relevance remain necessary.