CPT symmetry Updated 2025-09-17
Crow intelligence experiment Updated 2025-07-16
Department of the University of Oxford Updated 2025-07-16
E. Coli Whole Cell Model by Covert Lab Install and first run Updated 2025-07-16
At 7e4cc9e57de76752df0f4e32eca95fb653ea64e4 you basically need to use the Docker image on Ubuntu 21.04 due to pip breaking changes... (not their fault). Perhaps pyenv would solve things, but who has the patience for that?!?!
The Docker setup from README does just work. The image download is a bit tedius, as it requires you to create a GitHub API key as described in the README, but there must be reasons for that.
Once the image is downloaded, you really want to run is from the root of the source tree:This mounts the host source under The meaning of each of the analysis commands is described at Section "Output overview".
sudo docker run --name=wcm -it -v "$(pwd):/wcEcoli" docker.pkg.github.com/covertlab/wholecellecolirelease/wcm-full/wcEcoli, so you can easily edit and view output images from your host. Once inside Docker we can compile, run the simulation, and analyze results with:make clean compile &&
python runscripts/manual/runFitter.py &&
python runscripts/manual/runSim.py &&
python runscripts/manual/analysisVariant.py &&
python runscripts/manual/analysisCohort.py &&
python runscripts/manual/analysisMultigen.py &&
python runscripts/manual/analysisSingle.pyAs a Docker refresher, after you stop the container, e.g. by restarting your computer or running
sudo docker stop wcm, you can get back into it with:sudo docker start wcm
sudo docker run -it wcm bashrunscripts/manual/runFitter.py takes about 15 minutes, and it generates files such as reconstruction/ecoli/dataclasses/process/two_component_system.py (related) which is required to run the simulation, it is basically a part of the build.runSim.py does the main simulation, progress output contains lines of type:Time (s) Dry mass Dry mass Protein RNA Small mol Expected
(fg) fold change fold change fold change fold change fold change
======== ======== =========== =========== =========== =========== ===========
0.00 403.09 1.000 1.000 1.000 1.000 1.000
0.20 403.18 1.000 1.000 1.000 1.000 1.000 2569.18 783.09 1.943 1.910 2.005 1.950 1.963
Simulation finished:
- Length: 0:42:49
- Runtime: 0:09:13 Graduate course of the University of Oxford Updated 2025-07-16
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Ray Sidney Updated 2025-07-16
Said to be the 5th Google employee, and Eileen Gu's father: gossipnextdoor.com/meet-ray-sidney-eileen-guus-alleged-dad/
Strong CP problem Updated 2025-07-16
Very low frequency Updated 2025-07-16
Notably used for communication with submarines, so in particular crucial as part of sending an attack signal to that branch of the nuclear triad.
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Snap (package manager) Updated 2025-07-16
merlijn.sebrechts.be/blog/2020-08-02-why-one-snap-store/ has some very good comments on how
snap is more closed than Flatpak. Film genre Updated 2025-07-16
Financial company Updated 2025-07-16
Fine structure Updated 2025-07-16
Split in energy levels due to interaction between electron up or down spin and the electron orbitals.
Numerically explained by the Dirac equation when solving it for the hydrogen atom, and it is one of the main triumphs of the theory.
Firefox Updated 2025-07-16
Git tips git rebase 101 Updated 2025-07-16
Radio wave Updated 2025-07-16
This is likely the easiest one to produce as the frequencies are lower, which is why it was discovered first. TODO original setup.
Also because it is transparent to brick and glass, (though not metal) it becomes good for telecommunication.
Some notable subranges:
Regression Games Updated 2025-07-16
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