 FRET dipole orientation factor

The FRET dipole orientation factor describes the geometry of the two transition electric dipoles relative to their separation. Let ${\hat{\mathbf{\mu }}}_D$, ${\hat{\mathbf{\mu }}}_A$ and $\hat{\mathbf{r}}$ be their unit vectors. ThenFor a separation along $z$, parallel electric dipoles along $z$ give ${\kappa }^2=4$, parallel ones along $x$ give $1$, and one along $x$ with the other along $y$ gives $0$. Thus rotating a pair can change FRET efficiency without changing its separation.

The familiar value ${\kappa }^2=2/3$ requires suitable rapid, independent orientation averaging during the FRET donor lifetime. Random orientations across a population of slowly rotating fluorescent proteins do not establish that dynamic condition. ^[ref]