 Microplate reader

A microplate reader is an optical instrument that records signals from addressed wells in a microplate, allowing many small samples, references and repeats to be measured in one arrangement. In absorbance mode it acts as a spectrophotometer: wavelength-selected illumination passes through the well and a photodetector measures transmitted light. The vertical sample geometry makes the liquid depth part of the optical path length.^[ref]

For an ideal homogeneous non-scattering solution, the Beer-Lambert law giveswhere $\ell$ is the geometric light path through the solution. For an original dye example, suppose $\epsilon c=0.60\mathrm{c}{\mathrm{m}}^{-1}$. A0.50cm depth gives absorbance0.30 and transmittance about0.501, whereas a1.00cm depth gives absorbance0.60 and transmittance about0.251. The concentration is identical. A darker well can therefore result from a longer path rather than a more concentrated sample. Microplate path-length correction is needed when comparing such readings on a common path-length basis.

A manufacturer experiment used a yellow buffer at426nm in a96-well clear plate, with volumes from75 to300µL. A1cm cuvette gave absorbance0.556. Uncorrected plate values were roughly0.17–0.53, while path-length-corrected values ranged from0.55 to0.57. The varied-volume experiment directly illustrates why the raw signal cannot be interpreted as concentration alone.^[ref]

The same instrument technology estimates path length using water's near-infrared absorbance at1000 and900nm, with plate-background subtraction preceding normalization.^[ref] In a simple independent example, a sample reading0.34 with plate contribution0.04 leaves solution absorbance0.30. At path0.50cm, normalization to1cm gives0.60. Dividing the uncorrected0.34 by0.50 instead gives0.68, incorrectly assigning the plate's contribution to the solution.

The instrument must therefore preserve well positions, wavelength settings, reference measurements and the reduction applied to each reading. Blank correction, matched sample handling and appropriate measurement calibration help distinguish optical differences from differences in concentration. A microplate reader can produce an array of precise numbers while a shared path-length or background error affects the whole array.