Metabolism

Study of the metabolome.

Some notable examples:

For a commented initial example, see: e. Coli K-12 MG1655 gene thrA.

KEGG does the visual maps well.

But BioCyc is generally better otherwise.

TODO vs KEGG.

Present at: www.roche.com/about/philanthropy/science-education/biochemical-pathways/

TODO human presumably?

I don't think it has any advantage over KEGG however, besides historical interest? Maybe slightly more manual layout and so more beautiful?

James Somers (rightly) likes to point to it as a "biology is awesome" thing.

An artificial metabolic pathway using synthetic biology technology.

Design software for synthetic biological circuit.

The input is in Verilog! Overkill?

Then it essentially maps to a standard cell library of biological primitives!