Superintelligence by Nick Bostrom (2014) section "Whole brain emulation" provides a reasonable setup: post mortem, take a brain, freeze it, then cut it into fine slices with a Microtome, and then inspect slices with an electron microscope after some kind of staining to determine all the synapses.
Well, mind uploading would be kind of pointless without whole brain emulation, so they are almost synonyms.

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