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Whole cell simulation

Ciro Santilli (@cirosantilli, 37) ... Science Natural science Biology Level of organization of bodies Cell Single cell analysis
Updated 2025-07-16  0 By others on same topic  0 Discussions Create my own version
Tags: Computational biology, Organism model, Systems biology
Ciro Santilli started taking some notes at: github.com/cirosantilli/awesome-whole-cell-simulation. but they are going to be all migrated here.
It is interesting to note how one talks about single cell analysis, in contrast to whole cell simulation: experimentally it is hard to analyse a single cell. But theoretically, it is hard to simulate a single cell. This mismatch is perhaps the ultimate frontier of molecular biology.
Video 1.
A Computational Whole-Cell Model Predicts Genotype From Phenotype by Markus Covert (2013)
Source.

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  • E. Coli whole cell simulation
  • M. genitalium whole cell simulation

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  • E. Coli Whole Cell Model by Covert Lab
  • Multiomics
  • Never trust an experiment that is not supported by a good theory
  • Ron Maimon
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