Ciro Santilli started taking some notes at: but they are going to be all migrated here.
It is interesting to note how one talks about single cell analysis, in contrast to whole cell simulation: experimentally it is hard to analyse a single cell. But theoretically, it is hard to simulate a single cell. This mismatch is perhaps the ultimate frontier of molecular biology.
Video 1. A Computational Whole-Cell Model Predicts Genotype From Phenotype by Markus Covert (2013) Source.