An aglycone is the nonsugar partner recovered when the carbohydrate residue of a glycoside is removed. For the classical oxygen-linked description, IUPAC identifies that partner as the compound . The sugar-derived residue is sometimes called the glycone.[ref]
Nomenclature of Carbohydrates (Recommendations 1996) by Alan D. McNaught. Section2-Carb-33.1, paragraph defining aglycone and glycone
Methyl α-D-glucopyranoside supplies a concrete example. Its glycosidic attachment contains , so is a methyl group, . The corresponding aglycone is methanol, . The fragment and the compound are different chemical objects; a label on a structural drawing should not silently replace the recovered partner molecule.
As original formula bookkeeping, combining free glucose with methanol and subtracting water gives the molecular formula of the methyl glycoside. Reversing that balance accounts for the two partners of formal hydrolysis. It says nothing about reaction speed or the conditions needed for cleavage.
Calling a compound an aglycone describes its relationship to a particular glycoside; it does not by itself identify a biological activity. Oxygen-, nitrogen-, sulfur- and carbon-linked sugar derivatives require their corresponding attachment descriptions, so the example should not be applied indiscriminately to every sugar-containing compound.[ref]
Nomenclature of Carbohydrates (Recommendations 1996) by Alan D. McNaught. Sections2-Carb-33.1 and33.3–33.7: definitions and attachment-specific nomenclature
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