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The electron-optical column contains an electron gun, an accelerating supply, a condenser lens system, an objective aperture, an electron objective lens, scan coils and alignment/stigmation controls. The electron gun may use thermionic emission or field emission. The condenser lens system sets the incident probe current and source demagnification; the electron objective lens focuses the probe on the specimen. A movable specimen stage controls position, tilt and working distance. The column and specimen chamber need a vacuum system, appropriate pumps and specimen-transfer hardware. Detectors collect secondary electrons, backscattered electrons or characteristic X-rays; amplification and synchronized raster acquisition assign a measured signal to each image pixel. The first two signals provide different imaging information, while characteristic X-rays allow elemental analysis. A source, probe-forming optics, raster scan, specimen stage, detectors, acquisition electronics and vacuum system form the essential chain.^[ref]

In transmission electron microscopy, the electron objective lens forms an intermediate real-space image and intermediate/projector lenses enlarge it onto a screen or camera. The total optical magnification is the product of the relevant stage magnifications. The user changes imaging-lens excitations to select magnification, while separately controlling illumination and focus. Display resizing introduces an additional enlargement, so the recorded pixel calibration matters.

In scanning transmission electron microscopy, a focused probe is rastered across the specimen and a detector signal is assigned to each probe position. The displayed magnification is display width divided by scanned specimen width. The user increases magnification by reducing raster-deflection amplitude, independently of choosing a smaller incident probe with the probe-forming lenses. TEM changes image-forming lens magnification; STEM changes the raster field of view. A smaller field or more pixels does not create finer physical resolution than the probe, specimen scattering and detection permit. A calibrated real-space scale is more transferable than the apparent size on a monitor.^[ref]