Put , require , and use the dimensionless time . While X is produced, ; afterwards . X crosses the activation threshold on its rising branch at
Symmetry keeps . They initially receive production through X alone and need another interval of active input to reach . If this happens while X is still above threshold, their mutual OR activation sustains production permanently. X remains above until
The persistence correction to a gene-circuit pulse threshold uses the limiting latch condition is , yielding
For , and cross their common threshold and approach even after X decays away. For they either remain zero or make a subthreshold pulse and return to zero. Exact equality is sensitive to the convention for the ideal threshold, so robust switching requires a strict excess. At , , whereas and cross at in absolute time.
The shorter required production duration reflects X's persistence after production stops. Requiring would incorrectly discard that tail when all activating ligands remain present. If , no finite pulse reaches the required feedback-active state. The second panel of the figure in solution contrasts pulses shorter and longer than .
Write , , , and . The repressilator in the stated logic approximation is
Assume . Initially low Z allows X production; high Y blocks Z; and Y is initially at its unrepressed steady level. X first rises through at , turning Y production off. Y then decays through at , where , allowing Z to rise. Z reaches at and switches X production off. At this point , so X falls through at and releases Y production.
Y's rise then switches Z off, Z's fall releases X again, and the sequence repeats. Every segment is exponential relaxation towards one if its production gate is on, or towards zero if off. For a rising segment starting at , the next threshold time is ; for a falling segment starting at , it is . These rules determine the whole trace without pretending the concentrations are square waves. X, Z and Y peak in sequence after the stated initial condition; the last panel of the figure in solution gives an illustrative trajectory.
The delayed sequence of three inhibitory links supplies negative feedback with finite response times. Equal rates make the cycling symmetric after the initial transient, not simultaneous. If , repression is never reliably engaged and the proteins approach their unrepressed levels instead; oscillation is not implied for arbitrary thresholds or for every smooth regulatory law replacing the ideal relay.