For student in school , "lme1" is the random-intercept linear mixed modelwhereindependently. The estimates areThe fixed intercept is the population-average expected post-study score for an untreated reference student with PTHK zero. The random intercept is school 's deviation from that population intercept.
Treatment was assigned by school, so observations within one school are clustered data and plausibly correlated. A random intercept models shared unobserved school characteristics and prevents the effective amount of treatment-level information from being exaggerated by treating all students as independent.
The fitted school standard deviation is , so the estimated between-school variation is nonzero. Accounting for it raises the TV and SC standard errors from about in "lm1" to about in "lme1", reflecting that only 28 independently randomized schools identify those effects.
Conditionally on the school effect, the response variance is . Marginally,and two distinct students in the same school have estimated covariance .
There is no single coefficient estimate for the random effect because the 28 school deviations are modeled as draws from a mean-zero distribution. The summary reports the estimated distributional variance; individual empirical Bayes predictions can be extracted separately.
Model "lme2" replaces by a random intercept and random PTHK slope:with a fitted bivariate normal covariance matrix for . This adds a random-slope variance and an intercept-slope covariance.
The likelihood-ratio statistic isAn ordinary chi-squared reference is unreliable because the null random-slope variance is on the boundary and its correlation is unidentified there; the reported correlation of one also signals a nearly singular fit. A valid practical test is a parametric bootstrap: simulate many datasets from fitted "lme1", refit both models by maximum likelihood to each, recompute the likelihood-ratio statistic, and estimate the p-value by the fraction at least . The AIC favors "lme2" slightly, whereas its BIC is larger, so the descriptive criteria do not agree.
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