Reaction propensity function ($a_r(x)$)

The reaction propensity $a_r(x)$ is the instantaneous rate at which reaction $r$ fires when the copy-number state is $x$. Conditional on the present state, its reaction clock has an exponential distribution of rate $a_r(x)$.

A power-law propensity uses the same reactant monomial as a deterministic law of mass action, scaled by reactor volume. For example, a bimolecular channel may be assigned $a(x)=\alpha x^2/V$. This convention differs at small copy number from the combinatorial propensity $\alpha x(x-1)/V$ and must therefore be stated explicitly.