GHDL Updated 2025-07-16
Examples under vhdl.
Run all examples, which have assertions in them:
cd vhdl
./runFiles:
- Examples
- Basic
- vhdl/hello_world_tb.vhdl: hello world
- vhdl/min_tb.vhdl: min
- vhdl/assert_tb.vhdl: assert
- Lexer
- vhdl/comments_tb.vhdl: comments
- vhdl/case_insensitive_tb.vhdl: case insensitive
- vhdl/whitespace_tb.vhdl: whitespace
- vhdl/literals_tb.vhdl: literals
- Flow control
- vhdl/procedure_tb.vhdl: procedure
- vhdl/function_tb.vhdl: function
- vhdl/operators_tb.vhdl: operators
- Types
- vhdl/integer_types_tb.vhdl: integer types
- vhdl/array_tb.vhdl: array
- vhdl/record_tb.vhdl.bak: record. TODO fails with "GHDL Bug occurred" on GHDL 1.0.0
- vhdl/generic_tb.vhdl: generic
- vhdl/package_test_tb.vhdl: Packages
- vhdl/standard_package_tb.vhdl: standard package
- textio
* vhdl/write_tb.vhdl: write
* vhdl/read_tb.vhdl: read - vhdl/std_logic_tb.vhdl: std_logic
- vhdl/stop_delta_tb.vhdl:
--stop-delta
- Basic
- Applications
- Combinatoric
- vhdl/adder.vhdl: adder
- vhdl/sqrt8_tb.vhdl: sqrt8
- Sequential
- vhdl/clock_tb.vhdl: clock
- vhdl/counter.vhdl: counter
- Combinatoric
- Helpers
* vhdl/template_tb.vhdl: template
OurBigBook.com Stack Exchange Updated 2025-07-16
Stack Exchange solves to a good extent the use cases:
points of view. It is a big open question if we can actually substantially improve it.
Major shortcoming are mentioned at idiotic Stack Overflow policies:
- Scope restrictions can lead to a lot of content deletion: closing questions as off-topicThis greatly discourages new users, who might still have added value to the project.On our website, anyone can post anything that is legal in a given country. No one can ever delete your content if it is legal, no matter their reputation.
- Although you can answer your own question, there's no way to write an organized multi-page book with Stack Exchange due to shortcomings such as no table of contents, 30k max chars on answer, huge risk of deletion due to "too broad"
- Absolutely no algorithmic attempt to overcome the fastest gun in the West problem (early answers have huge advantage over newer ones): meta.stackoverflow.com/questions/404535/closing-an-old-upvoted-question-as-duplicate-of-new-unvoted-questions/404567#404567
- Native reputation system:
- if the living ultimate God of
C++upvotes you, you get10reputation - if the first-day newb of
Javaupvotes you, you also get10reputation
- if the living ultimate God of
- Randomly split between sites like Stack Overflow vs Super User, with separate user reputations, but huge overlaps, and many questions that appears as dupes on both and never get merged.
- Possible edit wars, just like Wikipedia, but these are much less common since content ownership is much clearer than in Wikipedia however
How to use an Oxford Nanopore MinION to extract DNA from river water and determine which bacteria live in it Bioinformatics Updated 2025-07-16
Because Ciro's a software engineer, and he's done enough staring in computers for a lifetime already, and he believes in the power of Git, he didn't pay much attention to this part ;-)
According to the eLife paper, the code appears to have been uploaded to: github.com/d-j-k/puntseq. TODO at least mention the key algorithms used more precisely.
Ciro can however see that it does present interesting problems!
Because it was necessary to wait for 2 days to get our data, the workshop first reused sample data from previous collections done earlier in the year to illustrate the software.
First there is some signal processing/machine learning required to do the base calling, which is not trivial in the Oxford Nanopore, since neighbouring bases can affect the signal of each other. This is mostly handled by Oxford Nanopore itself, or by hardcore programmers in the field however.
After the base calling was done, the data was analyzed using computer programs that match the sequenced 16S sequences to a database of known sequenced species.
This is of course not just a simple direct string matching problem, since like any in experiment, the DNA reads have some errors, so the program has to find the best match even though it is not exact.
The PuntSeq team would later upload the data to well known open databases so that it will be preserved forever! When ready, a link to the data would be uploaded to: www.puntseq.co.uk/data
gitk Updated 2025-07-16
Git remote communcation Updated 2025-07-16
Git tips But which commit from master did we conflict with exactly? Updated 2025-07-16
git rebase does not tell you that, and that sucks.We only know which commit from the feature branch caused the problem.
Generally we can guess or it is not needed, but
imerge does look promising: stackoverflow.com/questions/18162930/how-can-i-find-out-which-git-commits-cause-conflicts Git tips
git log --graph Updated 2025-07-16For the strong.
git log --abbrev-commit --decorate --graph --pretty=oneline master HEADOutput:
* b4ec057 (master) 5
* 0b37c1b 4
| * fbfbfe8 (HEAD -> my-feature) 7
| * 7b0f59d 6
|/
* 661cfab 3
* 6d748a9 2
* c5f8a2c 1If we also add the As we can see, this removes any commit that is neither:
--simplify-by-decoration, which you very often want want on a real repository with many commits:* b4ec057 (master) 5
| * fbfbfe8 (HEAD -> my-feature) 7
|/
* c5f8a2c 1- under a branch or tag
- at the intersection of too branches or tags
Git tips git rebase moves commits one by one Updated 2025-07-16
In order to solve conflicts, you just have to understand what commit you are trying to move where.
E.g. if from:we do:what happens step by step is first 6 is moved on top of 5:and then 7 is moved on top of the new 6:
5 master
|
4 7 my-feature HEAD
| |
3 6
|/
2
|
1git rebase master6on5 HEAD
|
5 master
|
4 7 my-feature
| |
3 6
| |
2-----------------+
|
17on5 HEAD
|
6on5
|
5 master
|
4 7 my-feature
| |
3 6
| |
2-----------------+
|
17on5 my-feature HEAD
|
6on5
|
5 master
|
4
|
3
|
2
|
1 Git tips How to visualize the commit tree Updated 2025-07-16
Generate a minimal test repo. You should get in the habit of doing this to test stuff out.
#!/usr/bin/env bash
mkdir git-tips
cd git-tips
git init
for i in 1 2 3 4 5; do
echo $i > f
git add f
git commit -m $i
done
git checkout HEAD~2
git checkout -b my-feature
for i in 6 7; do
echo $i > f
git add f
git commit -m $i
done Glucose Updated 2025-07-16
The most important on in metabolism internals, everything else gets converted to it before being processed in the .
GNOME Chess Updated 2025-07-16
The user friendly Chess UI! Exactly what you would expect from a GNOME Project package. But also packs some punch via the Universal Chess Interface, e.g. Stockfish just works.
GNU Taler Updated 2025-07-16
Centralized system that still attempts some level of privacy.
In it, a central bank issue tokens that are stored offline in your cell phone, a bit like cash bank notes.
When you take those tokens, a corresponding amount gets removed from your bank account, a bit like cash bank notes.
When a transaction is made, tokens are put into a spent token list via central API, and cannot be double spent thereafter. The corresponding ammount is then added to the bank account of the receiver. This also means that offline transactions are not possible.
Godlike Updated 2025-07-16
This vocabulary likely entered Ciro Santilli's vernacular through playing Counter-Strike when he was a teenager.
Good film Updated 2025-07-16
- There will be blood (2007). Business and cynicism. Also great music.
- Don't Look Up (2021). Politics.
Google 2FA app token can be updated without checking the old 2FA Updated 2025-07-16
Google Analytics Updated 2025-07-16
I need this for OurBigBook.com!! webmasters.stackexchange.com/questions/104241/can-google-analytics-track-url-fragment-in-url
They removed referrer path completely in GA4... OMG WTF are they doing!
Google custom silicon Updated 2025-07-16
Google has put considerable effort into custom hardware to greatly optimize its stack, in a way that is quite notable compared to other tech companies.
- 2021 www.theregister.com/2021/03/23/google_to_build_server_socs/ Google vows to build its own server system-on-chips, hires Intel veteran. Inevitable with the end of Moore's law. Instruction set architecture unannounced however. I'll bet ARM instruction set
- 2021 codec acceleration for YouTube: www.tomshardware.com/uk/news/intel-replaces-xeons-with-custom-vcus
Romance of the Three Kingdoms (1994 TV series) Updated 2025-07-16
There seems to exist a version with full Chinese + English subtitles: www.youtube.com/watch?v=0_r3eWfTMDs&list=PLdAMXqGeRsOkXzuocRkBPhe5RhZ6RotGH&index=2
www.youtube.com/watch?v=e8VWVvHjskM&list=PLIj4BzSwQ-_ueXTO7EBmShk1b3lEqc5b_ official CCTV电视剧 (CCTV TV Series Channel) upload without Chinese + English subtitles.
How to use an Oxford Nanopore MinION to extract DNA from river water and determine which bacteria live in it Experiment background Updated 2025-07-16
PuntSeq is a side project led by a few University of Cambridge PhDs that aims to determine which bacteria are present in the River Cam.
In July 2019, the PuntSeq team got together with the awesome Cambridge Biomakespace, an awesome biology makerspace open to all, to create a two day science outreach activity showing their procedures.
The data collected in this experiment, together with other collection sessions done by the organizers actually led to a publication on eLife: elifesciences.org/articles/61504 "Freshwater monitoring by nanopore sequencing" by Lara Urban et al. (2021), so it is awesome to see that were are actual being part of "real science".
Ciro knows nothing about biology, but since he is very curious about it, he jumped at this opportunity, and decided to document things as well as his limited knowledge would allow.
All participants chipped in some money to help cover the experiment's costs. Ciro suspects that this activity was done partially to help crowdfund the experiment, but it was a worthy investment!
The impressions you get from the experiment as a software engineer will be:
- OMG, this is so labour intensive, why haven't they automated this
- OMG, this is frightening, all the 8 hours of work I've just done are present in that tiny plastic tube
- Amazing! Look at that apparatus! And the bio people are like: I've used this a million times, it's cheap and every lab has one, just work faster and don't break you piece of junk!
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