High level simulation only, no way to get from DNA to worm! :-) Includes:
- nervous system
- muscle system
3D body viewer at: browser.openworm.org/ TODO can you click on a cell to get its name?
OpenWorm Sibernetic demo by Mike Vella (2013)
Source. Sibernetic adds a fluid dynamics solver for brain-in-the-loop simulation of C. elegans.Ciro Santilli started taking some notes at: github.com/cirosantilli/awesome-whole-cell-simulation. but they are going to be all migrated here.
It is interesting to note how one talks about single cell analysis, in contrast to whole cell simulation: experimentally it is hard to analyse a single cell. But theoretically, it is hard to simulate a single cell. This mismatch is perhaps the ultimate frontier of molecular biology.
A Computational Whole-Cell Model Predicts Genotype From Phenotype by Markus Covert (2013)
Source.