Solution

ID: past-exam-of-the-biological-physics-course-of-the-university-of-oxford/2021/4/b/solution

The polymer contour length and magnitude of total electric charge are
Use a uniform charged-sphere model for the packed DNA, a homogeneous dielectric with , and initially neglect electrostatic screening. Gauss's law gives inside the sphere and outside. Integrating the electrostatic energy both inside and outside,
For an illustrative aqueous relative permittivity and ,
The question does not specify permittivity; the result scales as . Using vacuum instead would increase it eightyfold and would not describe an aqueous interior.
Strictly, the work of packaging is a difference of electrostatic energies, rather than the packed self-energy alone. An extended charged rod also has self-energy. With a microscopic cutoff of order the DNA radius, the thin-rod approximation is
One derivation integrates the pair Coulomb potential along the rod, replacing separation by : the exact regularized expression is . The diagram's transverse label suggests , giving . Hence this explicit reference-state estimate is . The cutoff and precise initial conformation are additional model assumptions, but their correction is small compared with the unscreened sphere value.

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