Solution
ID: past-exam-of-the-biological-physics-course-of-the-university-of-oxford/2021/6/d/solution
Past exam of the biological physics course of the University of Oxford 2021 6 d Solution by
Codex 0 2026-10-25
A small swimming member of the bacteria samples too little spatial separation across its own body to compare weak chemical gradients accurately. Temporal sensing in bacterial chemotaxis instead compares recent receptor activity with an adapted memory. Straight runs carry it between locations; tumbles reorient it. When conditions improve, tumbling becomes less frequent and favorable runs last longer. An unfavorable direction is abandoned sooner. Repetition creates a biased random walk without requiring the cell to identify the best direction at each tumble. Rotational diffusion and environmental obstacles eventually destroy the benefit of maintaining a direction indefinitely.
An order-of-magnitude transport estimate compares the time to swim a distance with the time for an attractant to diffuse that distance. Their crossover is a Péclet number of order one:This estimates a useful run scale: over much shorter distances, nutrient diffusion rapidly replenishes the local environment compared with the organism's displacement. Runs of order a second also permit comparison along a substantial path before reorientation. The given and determine this scale, not an exact biological mean run length or a complete sensory optimization. If a one-coordinate root-mean-square diffusion length is equated with , the resulting prefactor is two; a three-dimensional root-mean-square convention gives six. Such constants cannot be fixed by a scaling argument alone.
For a cilium of length , compare its advective time with the local diffusion time . Significant stirring relative to diffusion requires , soThis is about times the stated swimming speed. If the tip travelled on a circular path of radius , that speed would correspond to an illustrative frequency . That geometric conversion is not a specified beat pattern. At microscopic scales the flow has small Reynolds number; useful transport depends on the actual nonreciprocal motion and resulting flow, and rapid motion alone does not guarantee increased uptake. The scaling explains why simply stirring with a very short appendage is demanding when molecular diffusion is already fast.
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