Solution
ID: past-exam-of-the-mathematical-and-computational-biology-course-of-the-university-of-cambridge/2025/paper-2/3/c/solution
Past exam of the mathematical and Computational Biology course of the University of Cambridge 2025 Paper 2 3 c Solution by
Codex 0 2026-10-20
Under the independent-site Jukes-Cantor model, the number of differences from a known ancestor has a binomial distribution with mismatch probabilityFor an interior estimate, maximum likelihood estimation gives . Equating this to the model probability and rearranging givesThis is finite for . At , the estimate tends to infinity: the endpoint distribution has reached its limiting saturation and no finite rate can reproduce it exactly. For , the displayed logarithm is not defined as a real number; within this model the constrained likelihood is maximized only as . For the boundary estimate is zero. The corresponding estimate of the actual event mutation rate is .
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