 Ultramicrotome

An ultramicrotome is a precision cutting instrument for producing very thin sections or successively exposing new specimen faces for electron microscopy. Ultramicrotomy combines a controlled specimen feed with a cutting stroke across a sharp diamond knife or suitable glass knife. A polymer block is one example of a specimen for materials work. JEOL describes preset feeds of tens of nanometres and notes that actual section thickness can differ from the setting.^[ref]

The mechanism must distinguish the feed direction, which sets the intended removed thickness, from the much longer cutting stroke across the block. Section collection supports transmission electron microscopy; an in-chamber version supports serial block-face scanning electron microscopy by imaging the remaining surface.

For an original cutting-budget example, suppose a polymer block is advanced by $60\mathrm{nm}$ per cut. After 250 uniform cuts the nominal removed thickness isIf one entire section is lost during collection, its neighbors' centers are $120\mathrm{nm}$ apart rather than $60\mathrm{nm}$, assuming all feeds were correct. The total removed thickness remains $15.0\mu \mathrm{m}$; the lost section leaves an observation gap. Recording only the number of surviving images would conceal that gap.

A physical check compares the intended feed with an independent thickness or accumulated-depth measurement, while recording specimen and knife conditions. A fine actuator increment alone does not establish the actual section thickness. Compression, uneven cutting and missing sections affect the geometry subsequently assigned to an image stack.