Hill coefficient 2026-10-20
The slope of against in a Hill equation description. A value above one supports positive cooperative binding under the model's assumptions. It does not by itself count occupied sites or identify a molecular mechanism.
Protein oligomerization Created 2026-10-20 Updated 2026-11-05
Protein oligomerization associates several protein subunits into a defined assembly, such as a protein dimer. It can create cooperative binding sites, regulate activity or build structural units. A measured assembly depends on concentration and conditions: a dimer can dissociate on dilution. Determining subunit count therefore requires an assay model as well as a measured size or signal. [ref]
Quasi-steady rate law for a two-substrate allosteric enzyme Created 2026-09-24 Updated 2026-11-05
A sequential two-binding model can produce the reduced reaction rate
Here is the free substrate concentration relative to a chosen scale , is product concentration, and has units of concentration per time. The dimensionless parameters must be obtained from a specified enzyme kinetics mechanism; the rational function alone does not identify a mechanism involving allostery.
For example, suppose a single substrate species binds twice in sequence, producing three enzyme states , and only makes product. If binding relaxes rapidly compared with catalysis, take the approximate binding balances
The total enzyme concentration gives
Multiplying by the turnover number yields the stated law with . These rapid-binding balances are an additional model assumption within a quasi-steady-state approximation.
At low substrate concentration, because the active state requires two binding events. At high substrate concentration, the rate tends to . Such limiting behavior helps compare candidate mechanisms with measured reaction rates; evidence for cooperative binding requires examining how the binding constants depend on occupancy.