Take logarithms entry by entry before centering. For tree , let , and put . The command
var(log(b)) computes the sample covariance matrix with the unbiased estimator normalizationThus entry is the sum of products of the centered log measurements divided by , not the logarithm of the covariance between the original measurements. Its diagonal entries are the three log-variable sample variances, and the off-diagonal entries are their sample covariances. The positive off-diagonal entries indicate positive association of the log measurements. Taking logarithms turns a multiplicative relation such as into the approximately linear relation , which motivates investigating principal components of these transformed observations. Articles by others on the same topic
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