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Convection mixes material vertically where the Schwarzschild criterion or Ledoux criterion allows it. Its chemical effect is controlled by competition between transport and reaction, rather than by a direct alteration of the equilibrium constant. Parametrize vertical transport by a vertical eddy diffusion coefficient $K_{zz}$; the eddy mixing time over a scale height isLet ${\tau }_{\mathrm{chem}}$ be the chemical relaxation time of the relevant interconversion. If reactions are faster, the gas follows local thermochemical equilibrium. If transport becomes faster, composition can be carried upward faster than it re-equilibrates. A chemical quench level is approximately where the two times match:For example, hot deep gas may contain abundant carbon monoxide. Strong mixing can maintain it in cooler layers where equilibrium would favour methane; this is carbon monoxide–methane quenching. Similar reasoning applies to nitrogen–ammonia quenching. The cooler nightside commonly has slower reaction rates and can preserve such quenched composition more readily, whereas sufficiently rapid dayside chemistry can restore local equilibrium. Neither statement is universal without the actual reaction network and temperature.

The observable atmosphere of a strongly irradiated hot Jupiter may be radiative and stable even if the deeper interior is convective. Deep convection influences the photosphere only if some mixing crosses the intervening radiative region, for example through overshoot or other dynamical transport. Moreover, transport from day to night is horizontal circulation, not vertical convection; its relevant competition is atmospheric advection time versus chemical relaxation time, giving horizontal chemical quenching. Convection can affect either hemisphere indirectly through connected vertical transport; strong deep convection alone does not guarantee a quenched observable composition.

Assume a hydrogen-helium perfect gas with mean particle mass $2.3m_H$, Jupiter gravity $g\simeq 24.8\mathrm{m}{\mathrm{s}}^{-2}$, and mixing over one atmospheric scale height. At $T=1000\mathrm{K}$,The eddy mixing time is ${\tau }_{\mathrm{mix}}\simeq H^2/K_{zz}$. A chemical quench level at one bar requires ${\tau }_{\mathrm{mix}}\lesssim {\tau }_{\mathrm{chem}}=10^5\mathrm{s}$, hence the vertical eddy diffusion coefficient must be of orderThe number depends quadratically on the assumed mixing length; using a fraction of $H$ reduces it accordingly.

Above the chemical quench level, neglect photochemistry, condensation, and molecular diffusion. The quenched atmospheric mixing ratio $f_A=n_A/n$ is approximately constant, while the number density isThus the abundance fraction is frozen, but the absolute number density falls with pressure and altitude. Examples are carbon monoxide–methane quenching, through $\mathrm{CO}+3{\mathrm{H}}_2\rightleftharpoons {\mathrm{CH}}_4+{\mathrm{H}}_2\mathrm{O}$, and nitrogen–ammonia quenching, through ${\mathrm{N}}_2+3{\mathrm{H}}_2\rightleftharpoons 2{\mathrm{NH}}_3$.