Illumina Updated 2025-07-16
The by far dominating DNA sequencing company of the late 2000's and 2010's due to having the smallest cost per base pair.
Illumina actually bought their 2010's dominating technology from a Cambridge company called Solexa.
To understand how Illumina's technology works basically, watch this video: Video 1. "Illumina Sequencing by Synthesis by Illumina (2016)".
Video 1.
Illumina Sequencing by Synthesis by Illumina (2016)
Source.
The key innovation of this method is the Bridge amplification step, which produces a large amount of identical DNA strands.
ImageMagick Updated 2025-07-16
Crop 20 pixels from the bottom of the image:
convert image.png -gravity East -chop 20x0 result.png
ImageNet1k download Updated 2025-07-16
To download from Kaggle, create an API token on kaggle.com, which downloads a kaggle.json file then:
mkdir -p ~/.kaggle
mv ~/down/kaggle.json ~/.kaggle
python3 -m pip install kaggle
kaggle competitions download -c imagenet-object-localization-challenge
The download speed is wildly server/limited and take A LOT of hours. Also, the tool does not seem able to pick up where you stopped last time.
Another download location appears to be: huggingface.co/datasets/imagenet-1k on Hugging Face, but you have to login due to their license terms. Once you login you have a very basic data explorer available: huggingface.co/datasets/imagenet-1k/viewer/default/train.
Contains 1,281,167 images and exactly 1k categories which is why this dataset is also known as ImageNet1k: datascience.stackexchange.com/questions/47458/what-is-the-difference-between-imagenet-and-imagenet1k-how-to-download-it
www.kaggle.com/competitions/imagenet-object-localization-challenge/overview clarifies a bit further how the categories are inter-related according to WordNet relationships:
The 1000 object categories contain both internal nodes and leaf nodes of ImageNet, but do not overlap with each other.
image-net.org/challenges/LSVRC/2012/browse-synsets.php lists all 1k labels with their WordNet IDs.
n02119789: kit fox, Vulpes macrotis
n02100735: English setter
n02096294: Australian terrier
There is a bug on that page however towards the middle:
n03255030: dumbbell
href="ht:
n02102040: English springer, English springer spaniel
and there is one missing label if we ignore that dummy href= line. A thinkg of beauty!
Also the lines are not sorted by synset, if we do then the first three lines are:
n01440764: tench, Tinca tinca
n01443537: goldfish, Carassius auratus
n01484850: great white shark, white shark, man-eater, man-eating shark, Carcharodon carcharias
gist.github.com/aaronpolhamus/964a4411c0906315deb9f4a3723aac57 has lines of type:
n02119789 1 kit_fox
n02100735 2 English_setter
n02110185 3 Siberian_husky
therefore numbered on the exact same order as image-net.org/challenges/LSVRC/2012/browse-synsets.php
gist.github.com/yrevar/942d3a0ac09ec9e5eb3a lists all 1k labels as a plaintext file with their benchmark IDs.
{0: 'tench, Tinca tinca',
 1: 'goldfish, Carassius auratus',
 2: 'great white shark, white shark, man-eater, man-eating shark, Carcharodon carcharias',
therefore numbered on sorted order of image-net.org/challenges/LSVRC/2012/browse-synsets.php
The official line numbering in-benchmark-data can be seen at LOC_synset_mapping.txt, e.g. www.kaggle.com/competitions/imagenet-object-localization-challenge/data?select=LOC_synset_mapping.txt
n01440764 tench, Tinca tinca
n01443537 goldfish, Carassius auratus
n01484850 great white shark, white shark, man-eater, man-eating shark, Carcharodon carcharias
huggingface.co/datasets/imagenet-1k also has some useful metrics on the split:
Impact factor Updated 2025-07-16
This metric is so dumb! It only helps maintain existing closed journals closed! Why not just do a PageRank on the articles themselve instead? Like the h-index does for authors? That would make so much more sense!
Then a specific metric is involved, sometimes we want to automatically add it to products.
E.g., in a context considering the common Minkowski inner product matrix where the 4x4 matrix and is a vector in
which leads to the change of sign of some terms.
Implosion-type fission weapon Updated 2025-07-16
Implosion-type fission weapons are more complicated than gun-type fission weapon because you have to precisely coordinate the detonation of a bunch of explosives.
Indian classical music Updated 2025-07-16
This was Ciro Santilli's main study/work music for several years around 2020. Tabla rules.
Infinity (1996 film) Updated 2025-07-16
Good film, it feels quite realistic.
It is a shame that they tried to include some particularly interesting stories but didn't have the time to develop them, e.g. Feynman explaining to the high school interns what they were actually doing. These are referred to only in passing, and likely won't mean anything to someone who hasn't read the book.
The film settings are particularly good, and give what feels like an authentic view of the times. Particularly memorable are the Indian caves shown the film. TODO name? Possibly Puye Cliff Dwellings. Puye apparently appears prominently up on another film about Los Alamos: The Atomic city (1952). It is relatively close to Los Alamos, about 30 km away.
The title is presumably a reference to infinities in quantum field theory? Or just to the infinity of love etc.? But anyways, the infinities in quantum field theory theory come to mind if you are into this kind of stuff and is sad because that work started after the war.
https://upload.wikimedia.org/wikipedia/en/4/46/Infinity_film_poster.jpg
Video 1.
Infinity Trailer (1996)
Source.
Inflation Updated 2025-07-16
Video 1.
One Million Dollars scene from Austin Powers
. Source.
Video 2.
100 Billion Dollars scene from Austin Powers
. Source.
Infrastructure as a service Updated 2025-07-16
You SSH into a an OS like Ubuntu and do whatever you want from there. E.g. Amazon EC2.
The OS is usually virualized, and you get only a certain share of the CPU by default.
Injective function Updated 2025-07-16
Mnemonic: in means into. So we are going into a codomain that is large enough so that we can have a different image for every input.
Innovate UK Updated 2025-07-16
In-order depth-first search Updated 2025-07-16
This is the order in which a binary search tree should be traversed for ordered output, i.e.:
This ordering makes sense for binary trees and not k-ary trees in general because if there are more than two nodes it is not clear what the top node should go in the middle of.
This is unlike pre-order depth-first search and post-order depth-first search which generalize obviously to general trees.
Integrated development environment Updated 2025-07-16
IDEs are absolutely essential for developing complex software.
The funny thing is that you don't notice this until someone shows it to you. But once you see it, there is not turning back, just like Steve Jobs customers don't know what they want quote.
Unfortunately, after the Fall of Eclipse (archive), the IDE landscape in 2019 is horrible and split between:
  • highly buggy but still feature rich Eclipse
  • many may many other feature lacking options using possibly more trendy and forward lasting implementations like Electron
  • awesome cross-platform proprietary JetBrains IDEs
  • the God-like Windows-only proprietary language-lacking Visual Studio
Programmers of the world: unite! Focus on one IDE, and make it work for all languages and all build systems. Give it all the features that Eclipse has, but none of the bugginess. Work with top project to make sure the IDE works for all top projects.
Projects of the world: support one IDE, with in-tree configuration. Complex integration is often required between the IDE and the build system, and successful projects must to that once for all developers. Either do this, or watch you complex project wither away.
Build tool maintainers: make it possible for IDEs to support your tool! E.g., implement JSON Compilation Database output so that IDEs can read the exact compiler commands from that, in order to automatically determine how files should be parsed! Or better, just use libllvm in your IDE itself as the main parser.
Ciro is evaluating some IDEs at: github.com/cirosantilli/ide-test-projects
Intelligence is hierarchical Updated 2025-07-16
This point is beautifully argued in lots of different sources, and is clearly a pillar of AGI.
Perhaps one may argue that our deep learning layers do form some kind of hierarchy, e.g. this is very clear in certain models such as convolutional neural network. But many of those models cannot have arbitrarily deep hierarchies, which appears to be a fundamental aspect of intelligence.
How to Create a Mind:
The lists of steps in my mind are organized in hierarchies. I follow a routine procedure before going to sleep. The first step is to brush my teeth. But this action is in turn broken into a smaller series of steps, the first of which is to put toothpaste on the toothbrush. That step in turn is made up of yet smaller steps, such as finding the toothpaste, removing the cap, and so on. The step of finding the toothpaste also has steps, the first of which is to open the bathroom cabinet. That step in turn requires steps, the first of which is to grab the outside of the cabinet door. This nesting actually continues down to a very fine grain of movements, so that there are literally thousands of little actions constituting my nighttime routine. Although I may have difficulty remembering details of a walk I took just a few hours ago, I have no difficulty recalling all of these many steps in preparing for bed - so much so that I am able to think about other things while I go through these procedures. It is important to point out that this list is not stored as one long list of thousands of steps - rather, each of our routine procedures is remembered as an elaborate hierarchy of nested activities.
Human Compatible: TODO get exact quote. It was something along: life goal: save world from hunger. Subgoal: apply for some grant. Sub-sub-goal: eat, sleep, take shower. Sub-sub-sub-goal: move muscles to get me to table and open a can.

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