Notably used for communication with submarines, so in particular crucial as part of sending an attack signal to that branch of the nuclear triad.
E. Coli Whole Cell Model by Covert Lab Install and first run Updated 2025-07-11 +Created 1970-01-01
At 7e4cc9e57de76752df0f4e32eca95fb653ea64e4 you basically need to use the Docker image on Ubuntu 21.04 due to pip breaking changes... (not their fault). Perhaps pyenv would solve things, but who has the patience for that?!?!
The Docker setup from README does just work. The image download is a bit tedius, as it requires you to create a GitHub API key as described in the README, but there must be reasons for that.
Once the image is downloaded, you really want to run is from the root of the source tree:This mounts the host source under The meaning of each of the analysis commands is described at Section "Output overview".
sudo docker run --name=wcm -it -v "$(pwd):/wcEcoli" docker.pkg.github.com/covertlab/wholecellecolirelease/wcm-full/wcEcoli, so you can easily edit and view output images from your host. Once inside Docker we can compile, run the simulation, and analyze results with:make clean compile &&
python runscripts/manual/runFitter.py &&
python runscripts/manual/runSim.py &&
python runscripts/manual/analysisVariant.py &&
python runscripts/manual/analysisCohort.py &&
python runscripts/manual/analysisMultigen.py &&
python runscripts/manual/analysisSingle.pyAs a Docker refresher, after you stop the container, e.g. by restarting your computer or running
sudo docker stop wcm, you can get back into it with:sudo docker start wcm
sudo docker run -it wcm bashrunscripts/manual/runFitter.py takes about 15 minutes, and it generates files such as reconstruction/ecoli/dataclasses/process/two_component_system.py (related) which is required to run the simulation, it is basically a part of the build.runSim.py does the main simulation, progress output contains lines of type:Time (s) Dry mass Dry mass Protein RNA Small mol Expected
(fg) fold change fold change fold change fold change fold change
======== ======== =========== =========== =========== =========== ===========
0.00 403.09 1.000 1.000 1.000 1.000 1.000
0.20 403.18 1.000 1.000 1.000 1.000 1.000 2569.18 783.09 1.943 1.910 2.005 1.950 1.963
Simulation finished:
- Length: 0:42:49
- Runtime: 0:09:13Said to be the 5th Google employee, and Eileen Gu's father: gossipnextdoor.com/meet-ray-sidney-eileen-guus-alleged-dad/
merlijn.sebrechts.be/blog/2020-08-02-why-one-snap-store/ has some very good comments on how
snap is more closed than Flatpak.TODO compare with actual datasetes.
The Men Who Stole the World by Benoît Bringer
. This timestamp contains a good explanation of how banks were knowingly reselling bad loans at incredible profits. It features Richard Bowen, previously from Citi Group compliance.- github.com/ekondis/mixbench GPL
- github.com/ProjectPhysX/OpenCL-Benchmark custom non-commercial, non-military license
Git tips The key to solve conflicts: see the two conflicting diffs Updated 2025-07-11 +Created 1970-01-01
The key to solve conflicts is:
You have to understand what are the two commits that touched a given line (one from master, one from features), and then combine them somehow.
This is likely the easiest one to produce as the frequencies are lower, which is why it was discovered first. TODO original setup.
Also because it is transparent to brick and glass, (though not metal) it becomes good for telecommunication.
Some notable subranges:
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