Ciro Santilli @cirosantilli 37

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Search engine optimization  Updated 2025-05-23  +Created 1970-01-01

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Taylor series  Updated 2025-05-23  +Created 1970-01-01

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An overview of recent non-standard Bitcoin transactions by 0xB10C  Updated 2025-05-23  +Created 1970-01-01

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b10c.me/observations/09-non-standard-transactions/

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Asthma  Updated 2025-05-23  +Created 1970-01-01

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ELF Hello World Tutorial / Executable hd  Updated 2025-05-23  +Created 1970-01-01

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Running:

hd hello_world.out

gives:

00000000  7f 45 4c 46 02 01 01 00  00 00 00 00 00 00 00 00  |.ELF............|
00000010  02 00 3e 00 01 00 00 00  b0 00 40 00 00 00 00 00  |..>.......@.....|
00000020  40 00 00 00 00 00 00 00  10 01 00 00 00 00 00 00  |@...............|
00000030  00 00 00 00 40 00 38 00  02 00 40 00 06 00 03 00  |....@.8...@.....|
00000040  01 00 00 00 05 00 00 00  00 00 00 00 00 00 00 00  |................|
00000050  00 00 40 00 00 00 00 00  00 00 40 00 00 00 00 00  |..@.......@.....|
00000060  d7 00 00 00 00 00 00 00  d7 00 00 00 00 00 00 00  |................|
00000070  00 00 20 00 00 00 00 00  01 00 00 00 06 00 00 00  |.. .............|
00000080  d8 00 00 00 00 00 00 00  d8 00 60 00 00 00 00 00  |..........`.....|
00000090  d8 00 60 00 00 00 00 00  0d 00 00 00 00 00 00 00  |..`.............|
000000a0  0d 00 00 00 00 00 00 00  00 00 20 00 00 00 00 00  |.......... .....|
000000b0  b8 01 00 00 00 bf 01 00  00 00 48 be d8 00 60 00  |..........H...`.|
000000c0  00 00 00 00 ba 0d 00 00  00 0f 05 b8 3c 00 00 00  |............<...|
000000d0  bf 00 00 00 00 0f 05 00  48 65 6c 6c 6f 20 77 6f  |........Hello wo|
000000e0  72 6c 64 21 0a 00 2e 73  79 6d 74 61 62 00 2e 73  |rld!...symtab..s|
000000f0  74 72 74 61 62 00 2e 73  68 73 74 72 74 61 62 00  |trtab..shstrtab.|
00000100  2e 74 65 78 74 00 2e 64  61 74 61 00 00 00 00 00  |.text..data.....|
00000110  00 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
*
00000150  1b 00 00 00 01 00 00 00  06 00 00 00 00 00 00 00  |................|
00000160  b0 00 40 00 00 00 00 00  b0 00 00 00 00 00 00 00  |..@.............|
00000170  27 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |'...............|
00000180  10 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
00000190  21 00 00 00 01 00 00 00  03 00 00 00 00 00 00 00  |!...............|
000001a0  d8 00 60 00 00 00 00 00  d8 00 00 00 00 00 00 00  |..`.............|
000001b0  0d 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
000001c0  04 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
000001d0  11 00 00 00 03 00 00 00  00 00 00 00 00 00 00 00  |................|
000001e0  00 00 00 00 00 00 00 00  e5 00 00 00 00 00 00 00  |................|
000001f0  27 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |'...............|
00000200  01 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
00000210  01 00 00 00 02 00 00 00  00 00 00 00 00 00 00 00  |................|
00000220  00 00 00 00 00 00 00 00  90 02 00 00 00 00 00 00  |................|
00000230  08 01 00 00 00 00 00 00  05 00 00 00 07 00 00 00  |................|
00000240  08 00 00 00 00 00 00 00  18 00 00 00 00 00 00 00  |................|
00000250  09 00 00 00 03 00 00 00  00 00 00 00 00 00 00 00  |................|
00000260  00 00 00 00 00 00 00 00  98 03 00 00 00 00 00 00  |................|
00000270  4c 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |L...............|
00000280  01 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
00000290  00 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
000002a0  00 00 00 00 00 00 00 00  00 00 00 00 03 00 01 00  |................|
000002b0  b0 00 40 00 00 00 00 00  00 00 00 00 00 00 00 00  |..@.............|
000002c0  00 00 00 00 03 00 02 00  d8 00 60 00 00 00 00 00  |..........`.....|
000002d0  00 00 00 00 00 00 00 00  01 00 00 00 04 00 f1 ff  |................|
000002e0  00 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
000002f0  11 00 00 00 00 00 02 00  d8 00 60 00 00 00 00 00  |..........`.....|
00000300  00 00 00 00 00 00 00 00  1d 00 00 00 00 00 f1 ff  |................|
00000310  0d 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
00000320  00 00 00 00 04 00 f1 ff  00 00 00 00 00 00 00 00  |................|
00000330  00 00 00 00 00 00 00 00  2d 00 00 00 10 00 01 00  |........-.......|
00000340  b0 00 40 00 00 00 00 00  00 00 00 00 00 00 00 00  |..@.............|
00000350  34 00 00 00 10 00 02 00  e5 00 60 00 00 00 00 00  |4.........`.....|
00000360  00 00 00 00 00 00 00 00  40 00 00 00 10 00 02 00  |........@.......|
00000370  e5 00 60 00 00 00 00 00  00 00 00 00 00 00 00 00  |..`.............|
00000380  47 00 00 00 10 00 02 00  e8 00 60 00 00 00 00 00  |G.........`.....|
00000390  00 00 00 00 00 00 00 00  00 68 65 6c 6c 6f 5f 77  |.........hello_w|
000003a0  6f 72 6c 64 2e 61 73 6d  00 68 65 6c 6c 6f 5f 77  |orld.asm.hello_w|
000003b0  6f 72 6c 64 00 68 65 6c  6c 6f 5f 77 6f 72 6c 64  |orld.hello_world|
000003c0  5f 6c 65 6e 00 5f 73 74  61 72 74 00 5f 5f 62 73  |_len._start.__bs|
000003d0  73 5f 73 74 61 72 74 00  5f 65 64 61 74 61 00 5f  |s_start._edata._|
000003e0  65 6e 64 00                                       |end.|
000003e4

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Anime  Updated 2025-05-23  +Created 1970-01-01

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Computer hardware component type  Updated 2025-05-23  +Created 1970-01-01

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Modular multiplication  Updated 2025-05-23  +Created 1970-01-01

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How to use an Oxford Nanopore MinION to extract DNA from river water and determine which bacteria live in it / PCR verification with gel electrophoresis  Updated 2025-05-23  +Created 1970-01-01

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Biology experiments are hard, and so they go wrong, a lot.

For this reason, it is wise to verify that certain steps are correct whenever possible.

And so this is the first thing we did on the second day!

Gel electrophoresis separates molecules by their charge-to-mass ratio. It is one of those ultra common lab procedures!

This allows us to determine how long are the DNA fragments present in our solution.

Since we know that we amplified the 16S regions which we know the rough size of (there might be a bit of variability across species, but not that much), we were expecting to see a big band at that size.

And that is exactly what we saw!

First we had to prepare the gel, put the gel comb, and pipette the samples into wells present in the gel:

To see the DNA, we added ethidium bromide to the samples, which is a substance that that both binds to DNA and is fluorescent.

Because it interacts heavily with DNA, ethidium bromide is a mutagen, and the biology people sure did treat the dedicated electrophoresis bench area with respect! Figure 4. "Gel electrophoresis dedicated bench area to prevent ethidium bromide contamination.".

The UV transilluminator we used to shoot UV light into the gel was the Fisher Scientific UVP LM-26E Benchtop 2UV Transilluminator. The fluorescent substance then emitted a light we can see.

As barely seen at Figure 8. "Fischer Scientific UVP LM-26E Benchtop 2UV Transilluminator illuminated gel." due to bad photo quality due to lack of light, there is one strong green line, which compared to the ladder matches our expected 16S length. What we saw it with the naked eyes was very clear however.

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Politics of the United States  Updated 2025-05-23  +Created 1970-01-01

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Real coordinate space of dimension three  Updated 2025-05-23  +Created 1970-01-01

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Real projective line  Updated 2025-05-23  +Created 1970-01-01

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Just a circle.

Take

R^{2}

with a line at

x = 0

. Identify all the points that an observer

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Theoretical Physics Reference by Ondrej Certík  Updated 2025-05-23  +Created 1970-01-01

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The only one on GitHub. In RST and renders to HTML with image formulas.

Too "direct formula overload" at first look.

By the creator of SymPy, who works at Los Alamos National Laboratory and has a PhD in chemical physics: s www.linkedin.com/in/ondřej-čertík-064b355b/ Man, big kudos to this dude.

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Algorithmic qubits  Updated 2025-05-23  +Created 1970-01-01

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Metric created by IonQ.

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Diophantine equation  Updated 2025-05-23  +Created 1970-01-01

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Polynomial (possibly a multivariate polynomial) with integer coefficients.

Sometimes systems of Diophantine equations are considered.

Problems generally involve finding integer solutions to the equations, notably determining if any solution exists, and if infinitely solutions exist.

The general problem is known to be undecidable: Hilbert's tenth problem.

The Pythagorean triples, and its generalization Fermat's last theorem, are the quintessential examples.

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ELF Hello World Tutorial / How to learn  Updated 2025-05-23  +Created 1970-01-01

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Spin like mad between:

standards
high level generators. We use the assembler as and linker ld.
hexdumps
file decompilers. We use readelf. It makes it faster to read the ELF file by turning it into human readable output. But you must have seen one byte-by-byte example first, and think how readelf output maps to the standard.
low-level generators: stand-alone libraries that let you control every field of the ELF files you generated. github.com/BR903/ELFkickers, github.com/sqall01/ZwoELF and many more on GitHub.
consumer: the exec system call of the Linux kernel can parse ELF files to starts processes: github.com/torvalds/linux/blob/v4.11/fs/binfmt_elf.c, stackoverflow.com/questions/8352535/how-does-kernel-get-an-executable-binary-file-running-under-linux/31394861#31394861

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ELF Hello World Tutorial / Implementations  Updated 2025-05-23  +Created 1970-01-01

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Compiler toolchains generate and read ELF files.
Sane compilers should use a separate standalone library to do the dirty work. E.g., Binutils uses BFD (in-tree and canonical source).

Operating systems read and run ELF files.
Kernels cannot link to a library nor use the C stlib, so they are more likely to implement it themselves.
This is the case of the Linux kernel 4.2 which implements it in th file fs/binfmt_elf.c.

Specialized libraries. Examples:
- github.com/eliben/pyelftools. By a hardcore Googler: plus.google.com/+EliBenderskyGplus/posts
- sourceforge.net/projects/elftoolchain

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Gossip  Updated 2025-05-23  +Created 1970-01-01

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High level quantum synthesis  Updated 2025-05-23  +Created 1970-01-01

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This is a term "invented" by Ciro Santilli to refer to quantum compilers that are able to convert non-specifically-quantum (functional, since there is no state in quantum software) programs into quantum circuit.

The term is made by adding "quantum" to the more "classical" concept of "high-level synthesis", which refers to software that converts an imperative program into register transfer level hardware, typicially for FPGA applications.

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Mitochondrion  Updated 2025-05-23  +Created 1970-01-01

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