Ciro's Edict #7 / --format-source Updated 2025-07-16
Added ourbigbook --format-source automatic code formatting. I implemented it for the following reasons:
  • I want to do certain automatic modifications to source code on web, e.g.:
    • allow users to select the parent article of a new article on the web UI, but that is currently doable only with \Include macros
    • allow users to edit the source only for a specific header
  • later on, much later, this will allow WYSIWYG export to plaintext
This also ended up having one unexpected benefit: whenever a new feature is added that deprecates an old feature, by converting the large corpus from github.com/cirosantilli/cirosantilli.github.io to the new feature I can test the new preferred feature very well.
For example, converting \x[blue cat] en masse to the new insane syntax <blue cat> found several bugs with the new insane syntax.
This seemed somewhat easy at first, so I started it as a way of procrastinating more urgent Web features (web scares me, you know), but it ended being insanely hard to implement, because there are many edge cases. Also, most bugs are not acceptable, as they would corrupt your precious source code and potentially output.
But well, it is done!
Although most of the key requirements were already in place since the last update, as usual doing things with the complex reference content stresses the system further and leads to the exposition of several new bugs.
The upload of OurBigBook Markup files to ourbigbook.com was done with the newly added OurBigBook CLI ourbigbook --web option. Although fully exposed to end users, the setup is not super efficient: a trully decent implementation should only upload changed files, and would basically mean reimplementing/using Git, since version diffing is what Git shines at. But I've decided not to put much emphasis on CLI upload for now, since it is expected that initially the majority of users will use the Web UI only. The functionality was added primarily to upload the reference content.
This is a major milestone, as the new content can start attracting new users, and makes the purpose of the website much clearer. Just having this more realistic content also immediately highlighted what the next development steps need to be.
Once v1.0 is reached, I will actually make all internal links of cirosantilli.com to point to ourbigbook.com/cirosantilli to try and drive some more traffic.
The new content blows up by far the limit of the free Heroku PostgreSQL database of 10k lines. This meant that I needed to upgrade the Heroku Postgres plugin from the free Hobby Dev to the 9 USD/month Hobby Basic: elements.heroku.com/addons/heroku-postgresql, so now hosting costs will increase from 7 USD/month for the dyno to 7 + 9 = 16 UDS/month. After this upgrade and uploading all of cirosantilli.com to ourbigbook.com, Heroku dashboard reads reads:
  • 30,918 rows out of 10,000,000
  • 61.0 MB (out of 10 GB)
so clearly if we are ever forced to upgrade plans again, it means that a bunch of people are using the website and that things are going very very well! Happy how this storage cost turned out so far.
One key limitation found was that Heroku RAM memory is quite limited at 512MB, and JavaScript is not exactly the most memory economical language out there. Started investigation at: github.com/ourbigbook/ourbigbook/issues/230 Initially working around that by simply splitting the largest files. We were just on the verge of what could be ran however luckily, so a few dozen splits was enough, it managed to handle 70 kB OurBigBook Markup inputs. So hopefully if we manage to optimize a bit more we will be able to set a maximum size of 100 kB and still have a good safety margin.
Ciro's Edict #6 / Misc advances Updated 2025-07-16
Made the website navbar and article lists more mobile friendly. Main motivation: improvised demos to people I meet IRL!
This was the major final step of fully integrating the OurBigBook CLI into the dynamic website (besides fixing some nasty bugs that escaped passed by me from the previous newsletter).
The implementation was done by "simply" reusing scopes, e.g.: cirosantilli's article about mathematics has scope cirosantilli and full ID cirosantilli/mathematics.
That on the website is equivalent to a local file structure of:
cirodown/mathematics.bigb
The problem is that a bunch of subdirectory scope operations were broken locally as well, as it simply wasn't a major use case. But now they became a major use case for , so I fixed them.
Now that we can reliably split files at will with \Include, I finally added this feature.
This means while developing a website locally with the OurBigBook CLI, if you have a bunch of files with an error in one of them, your first run will run slowly until the error:
extract_ids README.ciro
extract_ids README.ciro finished in 73.82836899906397 ms
extract_ids art.ciro
extract_ids art.ciro finished in 671.1738419979811 ms
extract_ids ciro-santilli.ciro
extract_ids ciro-santilli.ciro finished in 1009.6256089992821 ms
extract_ids science.ciro
error: science.ciro:13686:1: named argument "parent" given multiple times
extract_ids science.ciro finished in 1649.6193730011582 ms
but further runs will blast through the files that worked, skipping all files that have sucessfully converted:
extract_ids README.ciro
extract_ids README.ciro skipped by timestamp
extract_ids art.ciro
extract_ids art.ciro skipped by timestamp
extract_ids ciro-santilli.ciro
extract_ids ciro-santilli.ciro skipped by timestamp
extract_ids science.ciro
so you can fix file by file and move on quickly.
This was not fully trivial to implement because we had to rework how duplicate IDs are checked. Previously, we just nuked the DB every time on a directory conversion, and then repopulated everything. If a duplicated showed up on a file, it was a duplicate.
But now that we are not necessarily extracing IDs from every file, we can't just nuke the database anymore, otherwise we'd lose the information. Therefore, what we have to do is to convert every file, and only at the end check the duplicates.
The name cirodown should not appear anywhere now, except with very few exceptions, e.g.:
I have also squatted OurBigBook on all major social media handles for near future usage, e.g.: twitter.com/ourbigbook and so on.
I was going to do this sooner or later, it was inevitable, but the timing was partly triggered due to noticing that English speakers (and likely many other nationalities) are not able to easily read/hear/pronounce "Ciro".
Ciro's Edict #5 / Staging server Updated 2025-07-16
After breaking production and sweating for a bit hotfixing (not that anyone uses the website yet), I decided to be smart and created a staging server: ourbigbook-staging.herokuapp.com. Now I can blow that server up as I wish without afecting users. Documented at: cirosantilli.com/ourbigbook/staging-deployment
After something broke on the website due to SQLite vs PostgreSQL inconsistencies and took me a day to figure it out, I finally decided to update the test system so that OURBIGBOOK_POSTGRES=true npm test will run the tests on PostgreSQL.
Originally, these were being run only on SQLite, which is the major use case for OurBigBook CLI, which came before the website.
But the website runs on PostgreSQL, so it is fundamental to test things in PostgreSQL as well.
One of the key advances of the previous update was to show include headers on the table of contents.
This was to allow splitting source files freely.
While that goal was in principle achieved in that commit, when I went ahead to split the huge index of cirosantilli.com into multiple files, I notice several bugs that took a week to fix.
After all of these were solved, I finally managed to split the README at: github.com/cirosantilli/cirosantilli.github.io/commit/84c8a6e7fdbe252041accfb7a06d9b7462287131 and keep the previous desired output. You can now see that the README contains just:
\Include[ciro-santilli]
\Include[science]
\Include[mathematics]
\Include[technology]
\Include[art]
This split led to a small positive modification of the output as follows. Previously, a section such as "Quantum Electrodynamics" would have been present in the monolithic README.ciro as:
= Quantum electrodynamics
If you visited cirosantilli.com/quantum-electrodynamics, you would see see a link to the "nosplit" version, which would link you back to cirosantilli.com#quantum-electrodynamics, but that is not great, since this is was a humongous page with all of the README.ciro, and took long to display.
After the split, = Quantum electrodynamics is present under science.ciro, and the nosplit version is the more manageable cirosantilli.com/science#quantum-electrodynamics.
The key changes that were missing for that to happen were:
Currently, none of the crucial cross file features like \x, \Include and table of contents are working. I was waiting until the above mentioned features were done, and now I'm going to get to that.
And do 5 big queries instead of hundreds of smaller ones.
For example, a README.ciro document that references another document saying:
The \x[speed-of-light] is fast.
needs to fetch "speed-of-light" from the ID database (previously populated e.g. by preparsing light.ciro:
= Light

== Speed of light
to decide that it should display as "Speed of light" (the title rather than the ID).
Previously, I was doing a separate fetch for each \x[] as they were needed, leading to hundreds of them at different times.
Now I refactored things so that I do very few database queries, but large ones that fetch everything during parsing. And then at render time they are all ready in cache.
This will be fundamental for the live preview on the browser, where the roundtrip to server would make it impossible
E.g.:
README.ciro
= My website

== h2

\Include[not-readme]
not-readme.ciro
= Not readme

== Not readme h2
the table of contents for index.html also contains the headers for not-readme.ciro producing:
This feature means that you can split large input files if rendering starts to slow you down, and things will still render exactly the same, with the larger table of contents.
This will be especially important for the website because initially I want users to be able to edit one header at a time, and join all headers with \Include. But I still want the ToC to show those children.
This was a bit hard because it required doing RECURSIVE SQL queries, something I hadn't done before: stackoverflow.com/questions/192220/what-is-the-most-efficient-elegant-way-to-parse-a-flat-table-into-a-tree/192462#192462 + of course the usual refactor a bunch of stuff and fix tests until you go mad.
github.com/cirosantilli/node-express-sequelize-nextjs-realworld-example-app contains the same baseline tech as OurBigBook, and I have been use to quickly test/benchmark new concepts for the website base.
I'm almost proud about that project, as a reasonable template for a Next.js project. It is not perfect, notably see issues on the issue tracker, but it it quite reasonable.
The side effects of ambitious goals are often the most valuable thing achieved once again? I to actually make the project be more important thatn the side effects this time, but we'll see.
Since the last update, I've made some major improvements to the baseline tech of the website, which I'll move little by little into OurBigBook. Some of the improvements actually started in OurBigBook.com. The improvements were:
Virus Updated 2025-07-16
Bacteria Updated 2025-07-16
Arkarya Updated 2025-07-16
Name of the clade of archaea plus eukarya proposed at: www.frontiersin.org/articles/10.3389/fmicb.2015.00717/full. Much better term than prokaryote as that is not a clade. Let's hope it catches on!
Eukaryote Updated 2025-07-16

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