Unfortunately, due to lack of one page to rule them all, the on-Git tree publication list is meager, some of the most relevant ones seems to be:
- 2021 open access review paper: journals.asm.org/doi/full/10.1128/ecosalplus.ESP-0001-2020 "The E. coli Whole-Cell Modeling Project". They should just past that stuff in a README :-) The article mentions that it is a follow up to the previous M. genitalium whole cell model by Covert lab. Only 43% of known genes modelled at this point however, a shame.
- 2020 under Science paywall: www.science.org/doi/10.1126/science.aav3751 "Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation"
Please, use AsciiDoc and one page to rule them all.
That which does not exist, cannot be broken.
And of course:
zettelkasten.de/posts/overview/ mentions one page to rule them all:
How many Zettelkästen should I have? The answer is, most likely, only one for the duration of your life. But there are exceptions to this rule.