C. J. O'Kane 2026-11-05
Cahir J. O'Kane is a geneticist whose work includes developing enhancer trap experiments in Drosophila melanogaster. His institutional account places that work during his postdoctoral period with Walter Jakob Gehring in Basel. The original 1987 paper's first-page byline gives Cahir J. O'Kane and Walter J. Gehring.[ref]
Professor Cahir O'Kane profile by Churchill College. biography, Basel postdoctoral work and enhancer trapping
[ref]Detection in situ of genomic regulatory elements in Drosophila by C. J. O'Kane and W. J. Gehring. PNAS 84, page 9123, original byline
The experiment used a P element to place a weak-promoter reporter gene in different genomic contexts. Beta-galactosidase activity provided a visible readout of reporter expression. About seventy percent of forty-nine transformed lines showed spatially regulated expression in embryos, demonstrating the method's ability to recover distinct regulatory patterns.[ref]
Detection in situ of genomic regulatory elements in Drosophila by C. J. O'Kane and W. J. Gehring. Abstract and Results, promoter/reporter design and transformed-line observations
A pattern is a starting point for a biological question. For example, a hypothetical reporter restricted to one tissue identifies a useful expression domain, but does not alone establish the full normal expression of a nearby gene or prove that only one enhancer caused the pattern. Additional mapping and comparisons address those questions.
O'Kane's Cambridge research profile also describes work on the organization of axonal endoplasmic reticulum in Drosophila neurons. It connects the geometry and continuity of this membrane network with cellular function.[ref]
Cahir O'Kane research profile by the Department of Genetics at Cambridge. first-person biography and Research Interests, axonal ER organization
Both research themes use an experimentally tractable model organism to turn a difficult cellular or regulatory property into an observable phenotype. Enhancer trap 2026-11-05
An enhancer trap is a reporter gene arrangement used to reveal regulatory activity near its genomic insertion site. A weak promoter drives a measurable reporter; nearby enhancers can alter its expression in particular cells or developmental stages. The observed pattern therefore turns otherwise invisible gene regulation into a measurable output. It does not require the experimenter to begin with a visible mutant phenotype.[ref]
Detection in situ of genomic regulatory elements in Drosophila by C. J. O'Kane and W. J. Gehring. Abstract, PNAS 84 (1987), pp. 9123–9127; DOI 10.1073/pnas.84.24.9123.
In the original Drosophila study by C. J. O'Kane and W. J. Gehring, the reporter encoded beta-galactosidase. About 70% of 49 transformed lines showed spatially regulated expression in embryos, including patterns in the nervous system. The informative comparison is between insertion contexts: the reporter acts as a sensor of the regulatory environment rather than as a direct readout of one preselected native gene.[ref]
Detection in situ of genomic regulatory elements in Drosophila by C. J. O'Kane and W. J. Gehring. Abstract: reporter identity, number of lines and embryonic expression patterns.
For an illustrative interpretation, reporter activity in one tissue and not another suggests a difference in the regulatory inputs available there. It does not alone identify the responsible enhancer, prove its exact native target, or establish that every native expression feature has been reproduced. Those questions require additional evidence.
Strong lac expression requires relief of lactose-responsive repression together with a favourable glucose-responsive activation state. In Escherichia coli, the lac operon encodes beta-galactosidase, lactose permease and a transacetylase. LacI binds operator DNA and represses transcription; binding of the inducer allolactose shifts its conformation and reduces operator occupancy. Basal expression provides enough permease and beta-galactosidase to import and process some lactose, including formation of allolactose. This explains induction without requiring a completely silent system somehow to manufacture its own detector.
Glucose availability affects positive regulation. When glucose is scarce, the physiological state of the phosphotransferase system favours activation of adenylate cyclase and increased cyclic AMP. Binding of cyclic AMP activates catabolite activator protein, also called CRP, which binds near the lac promoter and helps recruit RNA polymerase. In glucose-rich conditions this activation is reduced. Operator repression and activator-dependent recruitment act at distinct sites, so relief of repression does not guarantee maximum expression. The promoter behaves approximately as a requirement for lactose availability AND glucose scarcity, but its quantitative output is graded rather than a perfect digital gate.
Glucose also regulates inducer entry. During glucose uptake through the phosphotransferase system, the glucose-specific EIIA glucose protein tends to be dephosphorylated. That form can bind and inhibit lactose permease, reducing lactose entry and hence allolactose formation. This inducer exclusion reinforces repression while a preferred substrate is being used. Mutations in the central cytoplasmic loop of the permease that abolish regulation and binding provide a way of separating transport inhibition from promoter regulation.[ref]
Involvement of the central loop of the lactose permease of Escherichia coli in its allosteric regulation by the glucose-specific enzyme IIA of the phosphoenolpyruvate-dependent phosphotransferase system by C. Hoischen and others. Hoischen and colleagues, 1996, abstract and permease-loop mutagenesis results
It is therefore incomplete to attribute every glucose effect to cyclic AMP alone.The four limiting conditions make the integration clear. Without lactose, LacI represses whether glucose is high or low; an active CRP cannot simply substitute for inducer. With lactose and abundant glucose, induction is limited by weak activation and often by inducer exclusion. With lactose and little glucose, repression is relieved and CRP-dependent recruitment is favoured, giving the highest expression. With both sugars initially available, glucose consumption followed by adaptation to lactose can produce diauxic growth; the timing depends on concentrations, transport and culture conditions.
Genetic and physiological controls distinguish the mechanisms. A loss-of-function LacI mutation should remove inducer dependence and can be complemented by a functional repressor supplied in trans. An operator mutation acts primarily in cis, on the linked operon. A superrepressor that cannot respond appropriately to inducer can remain repressive despite lactose. Compare promoter reporters and lactose-uptake measurements separately, because an uptake defect and a transcription defect can give similar growth phenotypes. Adding cyclic AMP tests one activation arm, but cannot necessarily overcome a permease blocked by inducer exclusion. The cell combines a local substrate signal with a global carbon-use signal, acting through both transcription and transport.