Use a force-tilted activation barrier for a generic one-coordinate escape model. A tensile force tilts a free-energy landscape to . If is the initial minimum and the saddle, define and the zero-force barrier . The relevant activation barrier is measured relative to the initial minimum, not an arbitrary absolute transition-state energy. To first order in force,
The attempt prefactor is assumed force independent, and the saddle displacement is approximated as constant. This single-barrier approximation need not survive large landscape deformations or a change of escape pathway. TODO: user-deferred biomolecular implementation; the protein-specific shear-force arrangement and attachment chemistry are not solved.
For a generic force-ramp measurement, a calibrated atomic force microscope cantilever pulls an attachment while a stage changes separation. cantilever deflection gives force , and the cantilever compliance correction subtracts from imposed separation to give tether extension, with further corrections for other apparatus compliance. A prescribed stage speed does not automatically produce constant force loading rate when tether stiffness varies; the assumed must be measured or controlled. The original schematic below illustrates a generic nonbiological bond/tether geometry. Protein-specific construction is deferred.
The no-rebinding approximation is a physical escape assumption: after the link breaks, separation removes the partners from the capture region before appreciable reassociation. It requires the integrated return/association probability during that separation to be small. If the separated state stays nearby or the force is held without separation, setting can fail. Under the stipulated approximation, with the link initially intact,
This survival under a linear force ramp differs from the probability density for rupture. It starts at one, decreases to zero and shifts to larger force as the loading rate increases. For small , ; a slow ramp allows much escape before substantial force is reached.
The median rupture force under a linear ramp satisfies , giving
At high loading rate, the slope of against tends to ; it is not exactly for a slow ramp. Fit the full expression across loading rates to recover and . The rupture-force probability density is , whose most probable rupture force under a linear ramp is if , and zero otherwise. median and mode are different observables and must not be interchanged when fitting.
At known temperature, yields the activation distance ; gives the zero-force mean lifetime in this exponential model. Absolute barrier height additionally requires the attempt prefactor, and neither equilibrium binding free energy nor an association rate follows from dissociation-only data. A loading-rate-dependent rupture force is a kinetic readout, not an intrinsic equilibrium strength. TODO: user-deferred biological conclusions. The protein-specific stability interpretation and cell-adhesion strategy are left unsolved.
Figure 1.
Original generic pulling arrangement, tilted energy landscape and calculated survival under a force ramp
. Details.
single-molecule force spectroscopy measures force and extension of an individual tether while controlling position or load. In an atomic-force arrangement, a synthetic chain connects a cantilever probe to a translated substrate. For the cantilever compliance correction, a deflection sensor gives , a calibrated spring constant gives , and substrate displacement gives chain extension after geometric offsets are removed. Additional linkers and instrument compliance must be included if appreciable. Thermal deflection calibration uses only after isolating the cantilever's calibrated thermal contribution.
An optical-tweezers implementation detects a tethered bead's displacement from a calibrated trap centre, with in the harmonic regime. Detector calibration, drag and trap linearity determine the usable force and frequency range. These instruments measure individual force–extension curves and distributions; averaging many curves can hide multiple tether populations.
For a synthetic freely jointed chain with Kuhn length ,
A strongly stretched worm-like chain instead has before backbone stretching becomes important. Fits can estimate contour and persistence lengths only in their appropriate regimes. Hysteresis and pulling-rate dependence test whether an apparent mechanical transition is quasistatic or activated.
Control single versus multiple attachments, subtract nonspecific adhesion, vary pulling speed, calibrate temperature and stiffness, and correct drift. A rupture peak is not a universal bond strength independent of loading history. A primary nonbiological example measured individual polydimethylsiloxane chains by atomic-force methods; its flexibility interpretation combines those measurements with molecular calculations.[ref]
Figure 1.
Original single-tether force-measurement schematic and the instrument-compliance relation
. Details.