Past exam of the biological physics course of the University of Oxford / 2015 / 1 / e / Solution

A green fluorescent protein readout follows the corresponding periodically regulated expression, so an individual cell has repeated peaks in fluorescence. Biological translation, fluorophore maturation, and protein degradation introduce a delay and smooth the peaks. For a simple mature fluorescent reporter with periodic production $s(t)$, $\dot{G}=s(t)-\gamma G$ gives $G(t)=G(0)e^{-\gamma t}+{\int }_0^t{e}^{-\gamma (t-u)}s(u)du$. A long lifetime therefore makes the modulation weak about an accumulated background. Intrinsic gene-expression noise makes successive peak heights and periods irregular; averaging cells with unrelated oscillation phases can hide the single-cell oscillations.