Choose one atomic orbital and on the two atoms and approximate a molecular orbital by the linear combination of atomic orbitalsProjecting the Schrödinger equation onto the two orbitals gives a generalized eigenvalue problem , where and . In an orthonormal basis the matrix isThe coupling mixes the atomic states and produces a lower bonding molecular orbital and upper antibonding molecular orbital. For equivalent real orbitals with overlap the normalized combinations are ; the precise energy ordering follows from the Hamiltonian matrix elements. This restricted orbital basis is an approximation to the molecule's wavefunction, rather than a claim that exact isolated-atom orbitals remain unchanged in the molecule.
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