Past exam of the mathematics course of the University of Cambridge 2003 iii Paper 71 7 a Solution Created 2026-10-03 Updated 2026-10-14
Model the polymerization Brownian ratchet by a rigid tip and a Brownian load. Let be the elementary load advance, its drag coefficient, and its diffusion coefficient. For a spherical load, , but no load radius is specified, so the rate is naturally expressed in terms of . Assume addition is effectively instantaneous once the gap reaches , and removal is negligible. The gap reflects at zero, first arrival at causes insertion, and insertion resets it to zero.
With no opposing force, the mean first-passage time satisfies , , . Integration gives . One advance per passage givesThe advance-event rate is , while is a length per time.
A constant resisting force produces drift . The diffusion-limited Brownian ratchet with constant load now satisfiesAn integrating factor gives . Integrating again from to gives , where . ThereforeAt weak load the ratio is ; at large load . Replacing the whole force dependence by would discard the first-passage kinetics of this regime.
For two staggered strands that alternately advance the leading tip by half a monomer, and . Two aligned strands, as schematically drawn, do not automatically have that half-step: an advance may be , with the other strand filling the same layer afterward. Use the same geometrical step in the passage problem and in converting event rate to velocity. The limiting formula assumes negligible removal, rigid tips, an overdamped load with constant drag, and fast insertion compared with . With appreciable removal or additional internal strand states, the renewal reset model must be replaced by a coupled gap/reaction process.
Polymerization Brownian ratchet 2026-10-13
A polymerization Brownian ratchet advances a filament by incorporating a monomer when thermal motion opens enough space between its tip and a resisting load. The irreversible chemical step rectifies the load's fluctuations. The elementary load advance depends on tip geometry; two staggered strands can give , whereas two aligned strands do not automatically give this step. An effective addition rate must refer to the same elementary advance.