webpack/template Updated 2025-07-16
../webpack/template contains a reasonable starter template.
This will produce, under dist/ the following minimized files:
You can also run this test with the development server on localhost:9000:
npm start
which uses unminimized outptus, and automatically push reloads the page whenever you change any of the input files!
At 7e4cc9e57de76752df0f4e32eca95fb653ea64e4 you basically need to use the Docker image on Ubuntu 21.04 due to pip breaking changes... (not their fault). Perhaps pyenv would solve things, but who has the patience for that?!?!
The Docker setup from README does just work. The image download is a bit tedius, as it requires you to create a GitHub API key as described in the README, but there must be reasons for that.
Once the image is downloaded, you really want to run is from the root of the source tree:
sudo docker run --name=wcm -it -v "$(pwd):/wcEcoli" docker.pkg.github.com/covertlab/wholecellecolirelease/wcm-full
This mounts the host source under /wcEcoli, so you can easily edit and view output images from your host. Once inside Docker we can compile, run the simulation, and analyze results with:
make clean compile &&
python runscripts/manual/runFitter.py &&
python runscripts/manual/runSim.py &&
python runscripts/manual/analysisVariant.py &&
python runscripts/manual/analysisCohort.py &&
python runscripts/manual/analysisMultigen.py &&
python runscripts/manual/analysisSingle.py
The meaning of each of the analysis commands is described at Section "Output overview".
As a Docker refresher, after you stop the container, e.g. by restarting your computer or running sudo docker stop wcm, you can get back into it with:
sudo docker start wcm
sudo docker run -it wcm bash
runscripts/manual/runFitter.py takes about 15 minutes, and it generates files such as reconstruction/ecoli/dataclasses/process/two_component_system.py (related) which is required to run the simulation, it is basically a part of the build.
runSim.py does the main simulation, progress output contains lines of type:
Time (s)  Dry mass     Dry mass      Protein          RNA    Small mol     Expected
              (fg)  fold change  fold change  fold change  fold change  fold change
========  ========  ===========  ===========  ===========  ===========  ===========
    0.00    403.09        1.000        1.000        1.000        1.000        1.000
    0.20    403.18        1.000        1.000        1.000        1.000        1.000
and then it ended on the Lenovo ThinkPad P51 (2017) at:
 2569.18    783.09        1.943        1.910        2.005        1.950        1.963

Simulation finished:
 - Length: 0:42:49
 - Runtime: 0:09:13
when the cell had almost doubled, and presumably divided in 42 minutes of simulated time, which could make sense compared to the 20 under optimal conditions.
Very low frequency Updated 2025-07-16
Notably used for communication with submarines, so in particular crucial as part of sending an attack signal to that branch of the nuclear triad.
Figure 1.
The Men Who Stole the World by Benoît Bringer
. This timestamp contains a good explanation of how banks were knowingly reselling bad loans at incredible profits. It features Richard Bowen, previously from Citi Group compliance.
Snap (package manager) Updated 2025-07-16
merlijn.sebrechts.be/blog/2020-08-02-why-one-snap-store/ has some very good comments on how snap is more closed than Flatpak.
Snap's permission system is extremely annoying, notably restricting access to home files. They need a popup that says "permission required by app, accept?" urgently!!!
Film about artificial intelligence Updated 2025-07-16
And by artificial intelligence, read of course (non-human-identical) artificial general intelligence.
Today-2022, this is placed under the science fiction film category. But maybe this might change during Ciro Santilli's own lifetime?
The basic criteria of "is a film about artificial intelligence good or not" to Ciro Santilli is: does the AI inhabit humanoid, or fully human looking, bodies? Bodies is a bad sign due to:
  • the best science fiction works deeply explore the consequences of one single technology: efficient humanoid bodies are a second technological breakthrough besides AI itself. The first AI will obviously be a supercomputer without a body
  • it is hard to imagine that the AI wouldn't organize itself as one huge central computer and R&D/command center. Perhaps there will be need for a few separate ones to optimize usage of natural resources, and to have some redundance in case a nuke blows the region, but there would be very very few of the think tanks. But having big centers is fundamental, because you centralize all the flow of ideas and their combination leading to new better outcomes for the AI. The mobile robot actors controlled by this center, if any exist, would then be slaves with some degree of autonomy and infinitely less computational powerful than the think tank.
Film genre Updated 2025-07-16
Fine structure Updated 2025-07-16
Split in energy levels due to interaction between electron up or down spin and the electron orbitals.
Numerically explained by the Dirac equation when solving it for the hydrogen atom, and it is one of the main triumphs of the theory.
Firefox Updated 2025-07-16

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