Covariance induced by a shared latent variable ($\mathrm{Cov}(A,B)=\mathrm{Var}(g(T))$)

Let $A,B$ be indicator random variables with conditional independence given a latent variable $T$, and suppose $\mathbb{E}[A\mid T]=\mathbb{E}[B\mid T]=g(T)$. ThenFor a short proof, conditional independence gives $\mathbb{E}[AB\mid T]=g(T{)}^2$. The law of total expectation gives $\mathbb{E}[AB]=\mathbb{E}[g(T{)}^2]$ and $\mathbb{E}[A]=\mathbb{E}[B]=\mathbb{E}[g(T)]$. Subtract their product to obtain the claimed variance. Since $0\le g(T)\le 1$, all the required expected values exist.

In the two-environment example of conditional independence, $g(T)$ is $0.1$ or $0.9$ with equal probabilities. Hence $\mathbb{E}[g(T)]=0.5$ and $\mathrm{Var}(g(T))=((0.1-0.5{)}^2+(0.9-0.5{)}^2)/2=0.16$. The two trials have zero conditional covariance in either environment, yet their unconditional covariance is positive because their success probabilities rise and fall together.

More generally, square-integrable conditionally independent random variables satisfyby the law of total covariance. Equal conditional means reduce this to the displayed variance; unequal conditional means need not give a nonnegative covariance. The equal-mean result explains correlated component evolutionary states in a coeval binary population without correlation between initial masses: variation in a shared environment can supply the entire covariance.