Section F: Evolution.
In allopatric speciation, geographically separated biological populations experience sufficiently reduced gene flow for divergence to accumulate through natural selection, genetic drift and other evolutionary processes. A barrier can split a former biological population, or a colonizing biological population can become isolated. The eventual species distinction requires persistent reproductive isolation, not merely physical separation at one instant.
In sympatric speciation, reproductive divergence originates without the initial geographic separation required by the allopatric model, at the spatial scale relevant to mating and dispersal. Divergent ecological selection and assortative mating, or some forms of polyploidy, can reduce gene exchange despite geographic overlap. Present-day sympatry alone does not establish this history: previously isolated species can meet through secondary contact. The difference concerns the geography of the origin of isolation, not whether the resulting species currently occupy different places.
Examples of prezygotic reproductive isolation, all acting before a zygote forms, include:
  • Habitat isolation: potential mates occupy different habitats or hosts and seldom encounter each other at mating sites.
  • Temporal isolation: breeding seasons, flowering times or daily mating periods differ, reducing opportunities for mating or pollen transfer.
  • Behavioral isolation: courtship signals, calls or chemical mating signals elicit responses mainly from the same species, preventing cross-group mating.
  • Mechanical isolation: incompatible mating structures or flower–pollinator fit prevent successful transfer of gametes.
  • Gametic incompatibility: gametes meet but cannot recognize, fuse or complete fertilization successfully.
The first four primarily reduce mating or gamete transfer; the last can occur after mating while still preceding fertilization. These differ from postzygotic isolation, such as hybrid inviability or hybrid sterility, which acts after the zygote has formed. Distinguishing these stages prevents “premating” from being used as a synonym for every prezygotic barrier.
Allopatric speciation is the predominant classical model and is generally regarded as especially important in animals. Geographic separation directly reduces gene flow, making it easier for divergent adaptation and incompatibilities to accumulate. The exact frequency across all organisms and historical events is not directly observable; a universal numerical fraction is not established by this statement.
Evidence combines the geographic arrangement of close relatives, phylogenetic trees, genetic divergence and independently reconstructed barrier histories. Sister lineages on opposite sides of barriers, island radiations founded by colonization, and differentiated biological populations that remain reproductively isolated after contact are mutually reinforcing observations. They are stronger when separation is independently dated and the origin of reproductive barriers is distinguished from later range changes.
A concrete primary example is the comparison of 15 trans-isthmian snapping-shrimp pairs using allozymes and mitochondrial COI. Concordant genetic differences support separation of lineages by the developing Isthmus of Panama, but divergence varied substantially between pairs. This cautions against assigning every pair to one simultaneous final closure event.[ref]
The inference is not exclusive. The island-palm study of Howea forsteriana and Howea belmoreana used sister relationships, island history, soil association and flowering-time differences to support a sympatric origin.[ref] Such cases show that sympatric speciation is possible. Conversely, sister-species allopatry by itself cannot prove historical allopatry, because extinction and range shifts can change their present distributions. The case for the common mode rests on combined historical evidence and the widespread effect of barriers on gene flow.

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