mRNA display is a technique used in molecular biology and biotechnology to select and analyze peptides or proteins based on the genetic information encoded in mRNA. The method combines aspects of mRNA and protein interactions to create a powerful platform for discovering new proteins, understanding protein functions, and developing therapeutic agents. ### Key Features of mRNA Display: 1. **Encoding Proteins**: In mRNA display, a library of mRNA molecules is linked to their corresponding peptides or proteins.
Minimotif Miner is a computational tool used primarily in bioinformatics for the identification and analysis of minimotifs—short sequences within proteins that can play crucial roles, such as binding sites for ligands, post-translational modification sites, or functional domains. These minimotifs are often of a length between 3 to 10 amino acids and may be critical for understanding protein function, interactions, and regulatory mechanisms.
Molecular models of DNA refer to representations that help visualize the structure and components of deoxyribonucleic acid (DNA). These models can be physical, such as 3D models made of various materials, or conceptual, such as diagrams or computer-generated representations. Here are some key aspects of molecular models of DNA: ### 1.
Multiplex polymerase chain reaction (PCR) is a variation of the standard PCR technique that allows simultaneous amplification of multiple target DNA sequences within a single reaction. This approach is particularly useful in applications where multiple genetic targets need to be analyzed at once, such as in diagnostic testing, pathogen detection, and genetic research. ### Key Features of Multiplex PCR: 1. **Multiple Primers**: In multiplex PCR, multiple sets of primers are designed to anneal to specific sites on target DNA simultaneously.
Nucleic acid hybridization is a molecular biology technique used to identify, analyze, or manipulate nucleic acids (DNA or RNA) by allowing complementary strands to bind together. This process occurs when two single strands of nucleic acids (either DNA or RNA) come together and form a double-stranded molecule through base pairing.
Nucleic acid thermodynamics is a field of study that focuses on the thermodynamic principles governing the stability, folding, and interactions of nucleic acids such as DNA and RNA. It encompasses the principles of energy changes, enthalpy, entropy, and free energy that dictate how nucleic acids behave in different conditions, including their stability under varying temperatures, concentrations, and ionic environments.
Nucleosome remodeling factors are a group of protein complexes that play a critical role in the regulation of chromatin structure and function. Chromatin, which is composed of DNA and histone proteins, can exist in a more compact, inactive form or a more relaxed, active form, depending on the cellular context and functional requirements.
A protoplast is a plant or bacterial cell that has had its cell wall removed, allowing the study of the cell membrane and its components in isolation. In plants, protoplasts are crucial for a variety of applications, including genetic engineering, cell fusion experiments, and studies of cellular processes. The removal of the cell wall can be done using enzymes, such as cellulase or pectinase, that break down the cell wall components.
Phage display is a molecular technique that allows for the identification and characterization of proteins, peptides, or antibodies by expressing them on the surface of bacteriophages (viruses that infect bacteria). This technique enables researchers to study interactions between proteins, identify binding partners, and explore various biological processes. Here's how phage display works in more detail: 1. **Construction of a Library**: A diverse library of DNA sequences encoding different peptides or proteins is constructed.
A primer dimer is a common artifact that can occur during the polymerase chain reaction (PCR) process. It results from the non-specific binding of two primers (short sequences of nucleotides) to each other instead of binding to the target DNA. This can lead to the amplification of the primers themselves rather than the intended DNA template. Primer dimers form when two primers have complementary sequences that allow them to anneal to each other, creating a double-stranded structure.
Phosphodiesterase 4 (PDE4) is a specific type of enzyme that belongs to the phosphodiesterase family. Phosphodiesterases are enzymes that break down cyclic nucleotides, which are important signaling molecules in various biological processes. PDE4 specifically hydrolyzes cyclic adenosine monophosphate (cAMP), leading to the termination of cAMP signaling in cells.
RNA-Seq, or RNA sequencing, is a powerful technique used to analyze the transcriptome of an organism. This approach allows researchers to determine the quantity of RNA in a sample at a given time, providing insights into gene expression levels, alternative splicing, and the presence of non-coding RNAs, among other aspects.
Pro-Gastrin-Releasing Peptide (Pro-GRP) is a precursor molecule to gastrin-releasing peptide (GRP), a neuropeptide involved in various physiological processes, including the regulation of gastrointestinal functions and neuroendocrine signaling. GRP is released from nerve endings in the gut and plays a role in stimulating gastric acid secretion, promoting gut motility, and influencing the release of other gastrointestinal hormones.
Pseudoproteases are a type of enzyme that have a structure similar to proteases but lack catalytic activity or the necessary functional properties typically associated with enzymes that cleave peptide bonds. While they may share some structural features with active proteases, such as the presence of certain motifs or domains that are characteristic of this enzyme class, pseudoproteases do not perform the same biological functions.
Pulsed-field gel electrophoresis (PFGE) is a laboratory technique used to separate large DNA molecules by applying an electric field that periodically changes direction. This method is particularly effective for the analysis of large fragments of DNA, generally ranging from about 20 kilobases (kb) to several megabases, which are too large to be effectively separated by standard gel electrophoresis techniques.
The RK2 plasmid is a well-studied example of a conjugative plasmid, which is a small, circular piece of DNA that replicates independently of the chromosomal DNA in a cell. RK2 is particularly notable for its role in the transfer of genetic material between bacteria, a process known as horizontal gene transfer. It was originally derived from the bacterium *Ralstonia solanacearum*.
RNA-targeting small molecule drugs are a class of therapeutics designed to selectively interact with RNA molecules in order to modulate their function and, consequently, influence biological processes associated with diseases. This approach aims to either enhance or inhibit the activity of specific RNA targets, such as mRNA, non-coding RNA (like siRNA and miRNA), or RNA structures, thereby affecting gene expression and cellular processes.
Random Amplification of Polymorphic DNA (RAPD) is a molecular biology technique used to generate DNA fingerprints. It is primarily used for the identification and characterization of genetic variations among individuals in a population. The method is based on the amplification of random segments of DNA using short, arbitrary primers through the polymerase chain reaction (PCR) process.
Small RNA sequencing is a high-throughput sequencing technique used to analyze small RNA molecules within a biological sample. These small RNAs typically range from about 18 to 30 nucleotides in length and include various classes of RNA, such as microRNAs (miRNAs), small interfering RNAs (siRNAs), piwi-interacting RNAs (piRNAs), and other non-coding RNAs.
Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 3. Visual Studio Code extension installation.Figure 4. Visual Studio Code extension tree navigation.Figure 5. Web editor. You can also edit articles on the Web editor without installing anything locally.Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.Video 4. OurBigBook Visual Studio Code extension editing and navigation demo. Source. - Infinitely deep tables of contents:
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact





