 C. Robin Buell

C. Robin Buell is a researcher in genomics and bioinformatics, including the genome biology of plants and plant-associated organisms. Her institutional research description emphasizes comparative genomics and the provision of databases and computational tools for interpreting genomes.^[ref]

Buell was first author of the 2003 complete genome sequence report for Pseudomonas syringae pathovar tomato DC3000. The publication described approximately $6.5$ million base pairs, distributed across one circular chromosome and two plasmids, with $5763$ predicted open reading frames. These are the study's reported assembly and annotation results, rather than an assertion that later annotations must retain exactly the same counts.^[ref]

An illuminating distinction is the difference between a sequence measurement and its interpretation. DNA sequencing supplies evidence for the order of nucleotides; genome annotation identifies candidate features and proposes their biological roles. An open reading frame is therefore not, by itself, a demonstration that a particular protein is expressed or has a proposed function. Independent evidence can test those additional claims.

The published scale also gives a useful arithmetic check. Dividing the approximate genome size by its predicted open reading frame count givesbase pairs of total genome sequence per predicted open reading frame. This is a bookkeeping ratio, not a mean coding-sequence length: its numerator includes noncoding sequence, and the annotation may contain overlapping features. Confusing these quantities would turn a reasonable summary of genome density into an incorrect claim about individual genes. This example shows why the definitions of both numerator and denominator matter when interpreting large biological datasets.