A methyltransferase is an enzyme transferring a methyl group from a donor to an acceptor. The acceptor can be a small molecule, DNA, RNA or a protein; the family name specifies a type of chemical transfer, not a universal biological function. Many methyltransferases use S-adenosylmethionine as donor. [ref]
Molecular Biology of the Cell, 4th edition by Bruce Alberts and others. Chapter 7, Control of Gene Expression: DNA methylation and chromatin modifications
For example, DNA methylation changes selected bases, while histone methylation modifies amino acid side chains in a different macromolecule. Different acceptor positions can have different consequences. A specific activity assay therefore needs a defined donor, acceptor and product measurement: disappearance of donor alone does not establish the intended site or exclude another methyl-transfer reaction.
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